KEGG T02510: HPOK113

Helicobacter pylori OK113: HPOK113_0655

Entry

HPOK113_0655      CDS       T02510

Symbol

pcnB

Name

(GenBank) poly(A) polymerase

K00970

poly(A) polymerase [EC:2.7.7.19]

Organism

hpyo Helicobacter pylori OK113

Pathway

hpyo03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:hpyo00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPOK113_0655 (pcnB)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpyo03019]
    HPOK113_0655 (pcnB)
Enzymes [BR:hpyo01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     HPOK113_0655 (pcnB)
Messenger RNA biogenesis [BR:hpyo03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     HPOK113_0655 (pcnB)

SSDB

Motif

Pfam:

PolyA_pol PolyA_pol_RNAbd

Other DBs

NCBI-ProteinID:

BAM96563

Position

700965..702188

AA seq 407 aa
MFELDKELQELFGIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHH
FRVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMN
AIAYSPTKGIIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSANLGFKIAPST
KEAVFACKDLLKHLSKERLQSELNKFLVGKNAYEVAKEYQEILELVTQEKIESLGFLKNA
PFNLELRLLGFFKHQKSLKNLRYPKKTCVLFLKAKECHKDFLNIHNKTELKFLLKNYDLE
PFNLALDFYALKNPKRALKIKSLLKEISNANEPFKKEHLALKGSTLQNLGYQHQQIGEIL
NACLNLVIAHPKNNSLEWLIKWVKDHYLLNDAINLSPIGKKITNGKT

NT seq 1224 nt +upstreamnt +downstreamnt
gtgtttgaactagacaaagaattacaagaattgtttggcatttatgaaaaatccccctat
gagctttacttggtaggggggtgcgtgcgcgattgtttaatgggcattacccctaaagat
tacgatttaacttcaaacgctttagtcaatgagagtaaagagcttcttttaaaacaccat
tttagggtgctagaaaccggcatcaagcacggcacgatcacggctcttaaaaacaatcaa
agctatgaaatcacaacttttagaattgaaaaagggcatatcaagcaccgaaagcctaaa
gaattggtttttagcgctcgtttaacagacgacttaaagcggcgcgattttagcatgaat
gcgatcgcttatagccctacaaaagggattattgatcctttcaaagggcaaaatgcgatt
gaaaatcaaatgattgaatgcgtgggggaagcgcgattgaggttttttgaggacgcttta
aggattttaagagcattgcgatttagtgcgaatctaggctttaagatagcgccaagcacc
aaagaagcggtttttgcgtgtaaggatttgttaaaacacctctccaaagagcgcttacaa
agcgaattgaataagtttcttgtggggaaaaacgcttatgaagtggctaaagaatatcaa
gaaattttagagttggttactcaagagaaaatagaaagtttagggtttttaaaaaacgcg
cccttcaatctggaattaagattgttagggttttttaaacaccaaaaaagtttaaaaaat
ttacgctaccctaaaaaaacttgtgttttatttttaaaagctaaagaatgccataaagat
tttttaaatattcataacaaaacagaattaaaatttttattgaaaaactacgatttagag
ccttttaatttggctttagatttttatgcgctcaaaaaccccaaacgcgctttaaaaatt
aaaagcttgttaaaagaaatatccaacgctaacgagccttttaaaaaagaacacctagcc
cttaagggcagcacgctccaaaatttgggctaccagcaccaacaaatcggcgaaatcttg
aacgcatgcctaaatttagtcatcgctcaccccaaaaataattctttagaatggctgata
aaatgggttaaggatcattatttacttaatgatgctataaacctttcgccaataggcaaa
aaaattacaaatggaaaaacatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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