KEGG   Herbaspirillum rubrisubalbicans: Hrubri_0013
Entry
Hrubri_0013       CDS       T04238                                 
Name
(GenBank) type III restriction protein res subunit Type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
hrb  Herbaspirillum rubrisubalbicans
Brite
KEGG Orthology (KO) [BR:hrb00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:hrb02048]
    Hrubri_0013
Enzymes [BR:hrb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Hrubri_0013
Prokaryotic defense system [BR:hrb02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Hrubri_0013
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD HSDR_N Helicase_C HSDR_N_2 SNF2-rel_dom MmeI_N AAA_19 DUF87
Other DBs
NCBI-ProteinID: ALU87247
UniProt: A0A0U3LRD1
Position
14155..16881
AA seq 908 aa
MTSRNEAQTRTEIIDSQLARAGWSKNRRTLLEEYLLTAAEPAANGGISQFADYVLLGADG
SPIAVVEAKSSSRDEIAGKRQASDYADAIKAKFGVDPFVFLTNGKEIQFWDRERYAPRKV
SGFYTRDDLERLRHQRQFAEPLHKVSINADIAGRVYQNEAIRRITEGVDAAKRKFLLVMA
TGTGKTRTTIALVDALLRSKRTQRVLFLADRRELVRQAMSEFKSHLPNESVARIEMGETS
GARIQFATYPSMMQVYSRLSVGYYDLIVADESHRSIYQRYKAIFDHFDAIQLGLTATPTD
YIDHNTFELFDCGDRVPSYYYSYEQAIADKNLVNYRVLDAQTTFQLQGIQGDALPEPLKQ
MARDQGVELDELNFDGSDIEKSIVNQGTNDAIVREFMERSRKDERGLPHKSIVFAISHAH
AKRIYEGFNRLYPELQREGMVEIIDSHMERAEATLNDFKYRAMPRVAISVDMLDTGVDIP
AIQNLVFAKPVFSKVKFWQMIGRGTRLHTDKATGEPKKDFLIIDHWRNFAFFKLKPDGEI
DHPSEPLPVRLFRLRLEKWQLLHAQQQDTQDAVLDLQAMLQTLPRHSINVRPHWDELDAL
MIKWPDPSKSVVEHISKTIAPLTVLGPLAGLDELQFRIWCERLTVAWLKADGGEQSKMKE
RIQEAISSLTPNLPEVRRVAEQLSWVTSVGFWMHLDMARLAALQSLFAPLMRYRAEIPGD
TVEINLPDSIAQRSWIIYGPTGEGAFAESYRERVEVLVRQLANQLPELTKLKQGQKLNDT
ELERISETLNHTDLFVTEDTLRMAFEAPSASLADFLRHILCDDAHLPNREERINAAFDAF
IAAHGYLRANQLNFLRAVKAAVLRHGRITRAALSEPPLSRVGQVETLFPLSEITELINLA
NQLVDEAA
NT seq 2727 nt   +upstreamnt  +downstreamnt
atgactagccgtaatgaagcccaaacacgaactgagatcattgattctcagctggcgcgt
gcaggatggtccaaaaatcgtcggactctccttgaagaatatctcctcacagcagcagag
cctgctgccaacggtggtatttcccagtttgctgactatgtccttttgggcgcagatggt
agcccaattgctgtggtcgaggctaagagttcatctcgcgatgagatcgccggcaagcgg
caagcaagcgactatgctgatgcgattaaggctaagtttggagtggatccttttgtcttc
ctaacaaatgggaaagagatccagttttgggatcgtgaacggtacgctccaagaaaagtt
tctggattttatacaagggatgatctcgagagattacgacatcagcgacagttcgcggaa
cccttgcataaagtttccatcaatgccgacattgctggtcgcgtctaccagaatgaagcc
attcgacgtattactgagggggtggatgccgccaagcgtaagttcttactggtaatggcc
actggcacgggcaagacgcgaacaactatcgctctggtagacgccctactacggtccaaa
cgcacccaacgtgtgctgtttctagcggatcggcgagagttggtgcggcaggcgatgtcg
gaatttaaatcgcatttgccaaacgaaagcgtggcgcgtattgagatgggtgaaacgtct
ggagcacggatccagtttgcgacctacccaagcatgatgcaggtgtattcacgtttatcg
gttggatactacgacctgattgttgccgatgaaagccaccgttccatctatcagcgttat
aaggcaatttttgatcacttcgacgctattcagcttggactgactgccactcccacggac
tacattgatcacaatacgtttgagctgttcgattgtggtgaccgtgtgccgagctactat
tacagctatgaacaagctattgccgataaaaatctggtgaactaccgcgttcttgacgcg
caaactaccttccagcttcaaggcatccaaggcgatgcgctacccgagccattaaagcag
atggctcgagaccagggcgtggagcttgatgagctcaacttcgatggcagtgatattgaa
aaaagtattgtcaaccagggtacaaacgacgccatcgtgcgagagtttatggagagaagc
cgtaaggacgagcgtgggctgccacacaagtctatagtcttcgcaattagtcatgctcat
gcaaaaagaatctatgaaggattcaaccgcctatatccggaactgcagcgtgaaggcatg
gttgaaatcattgacagtcacatggagcgcgcagaggcgactttaaatgacttcaagtat
cgcgctatgccgcgtgtagctatctctgttgacatgcttgatacgggagtggacatacct
gctatccaaaatttggtattcgctaaacctgttttcagtaaggtcaagttttggcagatg
atcggccgtggtactcgactgcatactgataaggctactggagagccaaagaaagatttt
ttgatcattgatcattggagaaattttgcattttttaagcttaaacccgatggcgagatc
gaccaccctagtgagccgctgcctgtacgcctcttccgcctacggttggaaaagtggcag
cttttgcacgctcagcaacaagatacgcaagacgcggttctggatttgcaggcgatgttg
caaaccttgccccggcatagcatcaatgtccgtccgcattgggacgagctcgatgcgttg
atgatcaaatggccagatcctagtaaaagtgtagttgaacacatctccaaaacaattgca
cccttgacggtactcggcccgttagctgggctagacgaacttcaattccgtatttggtgt
gagcgtctcacagtggcctggcttaaggctgatggaggcgagcaatcgaagatgaaagaa
cgcattcaggaagcgattagcagtttgacgccaaaccttccagaggtccggcgtgtcgcc
gagcagctttcttgggtaacctccgttggcttttggatgcacttggatatggcacgctta
gccgcacttcaatccttgtttgcgccattaatgcgttatcgcgcagagatacctggagat
acagttgaaatcaatctcccggacagcattgcccagcgcagctggatcatctacggccct
accggggaaggtgcatttgccgaaagctatcgggagcgagtcgaagtgttggtgcgtcag
ctggctaaccagcttcccgaactgactaagcttaaacaaggccagaaattgaatgacacc
gagctagaaagaatcagtgagactttgaatcacacagatctttttgttacggaagacacc
ttgcgtatggcatttgaagcaccttccgcatctctggccgattttctcagacatatttta
tgcgacgatgcgcatctacctaatcgagaagagcgcatcaacgctgcgtttgacgccttc
atcgcagcccacggatatttgcgcgctaatcaactcaacttcctgcgcgcagtaaaggca
gccgtgcttcgtcacggtcgtatcacacgcgcggcactcagcgagccccccctctctcgc
gtgggccaggttgaaacattgtttcctctttcggaaatcaccgaacttattaacctcgcc
aatcaattggtggacgaggcagcctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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