KEGG   Herbaspirillum rubrisubalbicans: Hrubri_1726
Entry
Hrubri_1726       CDS       T04238                                 
Symbol
ddpA
Name
(GenBank) ABC-type dipeptide transport system, periplasmic protein
  KO
K02035  peptide/nickel transport system substrate-binding protein
Organism
hrb  Herbaspirillum rubrisubalbicans
Pathway
hrb02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:hrb00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Hrubri_1726 (ddpA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:hrb02000]
    Hrubri_1726 (ddpA)
Transporters [BR:hrb02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    Hrubri_1726 (ddpA)
SSDB
Motif
Pfam: SBP_bac_5
Other DBs
NCBI-ProteinID: ALU88931
UniProt: A0A0U3LH71
Position
complement(2005207..2006706)
AA seq 499 aa
MKQRVSRFLLCAMSSTVLAACSLPTLAVTLNISLDADPGKLDPTQSSMLNERILYQSIFD
KLVDLDGEGKIVPMLAERWTVSDDQKTYTLYLRKGVKFQDGTPFDAKAVEFNLLRGQEKT
SLRRNELKYVSKITVVDDHTIKLDLSTPFAPFLSILTDRAGMMSSPTAVKKYGEDYVNHP
VGTGPFIYEGRLKGATLTLKKNPDYWRAGLPKVDEVVYKIMPDVNVAFNNLRSGQVDISN
RFPYKEITNVPANANYTVLNKPSLGFRGFYLNTTKPPFDKKEVREAVDILIDRNAIAKVV
YNNAVAPGHSPFSKAQFANGPGDVPPKVDVARAKALLKAAGKEGGFSFKLTLPTTADELQ
AGQMIQGMLRPAGITVTLEKTEIASQVEAGKTGAFEGLFLGWSGRPDPDQNIFDFVNSGG
SMNYSHIAAKEVDDLLQQARVEGDQAKRKVLYDQAMAILVKEVPYIYLVHDNVLFGIAKS
VKGFQYVPDGVIRTATVSK
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgaagcagcgtgtctcccgtttcctgctgtgcgcaatgtcctcgaccgtgctggcggcc
tgctccctgcccacgctggcggtgacgctcaacatctcgctggatgccgatcccggcaag
ctcgatccgacgcaatcgtcgatgttgaacgagcgcatcctctaccagagtatcttcgac
aagctggtggacctggatggcgaaggcaagatcgtccccatgctggccgagcgctggacc
gtttccgacgatcagaagacctacacgctctacctgcgcaaaggggtcaagttccaggac
ggcacgcccttcgacgccaaggcggtggagttcaacctgctgcgcggccaggagaaaact
tccctgcgccgcaacgaactgaaatacgtcagcaagatcacggtggtggacgatcacacc
atcaagctggatctgtccacgcccttcgcgcccttcctgtcgattctcaccgaccgcgcc
ggcatgatgtcctcgcccacggccgtgaagaaatacggcgaggattacgttaaccatccg
gtcggcaccggccccttcatctacgaagggcgtctcaaaggcgccacgctcacgctgaag
aagaatcccgactactggcgcgccggcctgcccaaggtcgacgaagtggtctacaagatc
atgccggacgtcaatgtggcctttaacaacctgcgcagcggccaggtcgacatcagcaac
cgcttcccctacaaggaaatcaccaacgtcccggccaacgccaattacacggtgctcaac
aagccctcgctgggctttcgcggcttttacctgaataccaccaagccacccttcgacaag
aaggaagtgcgcgaagccgtcgacatcctcatcgaccgcaatgccatcgccaaggtggtc
tacaacaatgcggtagcacccggtcactcgcccttctccaaggcacagttcgccaatggt
cccggcgacgtgccacccaaggtcgacgtggcccgcgccaaggccctgctcaaggcggcc
ggcaaggaaggcggcttcagcttcaagctgaccctgcctaccacggccgacgaattgcag
gccggccagatgatccagggcatgttgcgtccggcgggcatcaccgtcacgctggagaag
accgagatcgcgtcccaagtcgaagccggtaagaccggcgcctttgaaggcctcttcctg
ggatggagcggacgccccgacccggaccagaacatctttgacttcgtgaactccggcggc
tcgatgaactattcgcacatcgctgccaaggaggtggacgacctgctgcagcaggcccgg
gtggaaggcgaccaggccaagcgcaaggtgctctacgaccaggccatggcgatcctggtc
aaggaagtgccctacatttatctggtgcatgacaacgtgctcttcggcatcgccaagtcg
gtcaagggcttccagtacgtgcccgatggcgtgatccgcaccgctaccgtctccaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (9)   

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