KEGG   Helobdella robusta: HELRODRAFT_157038
Entry
HELRODRAFT_157038 CDS       T03272                                 
Name
(RefSeq) hypothetical protein
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
hro  Helobdella robusta
Pathway
hro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HELRODRAFT_157038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hro03019]
    HELRODRAFT_157038
Messenger RNA biogenesis [BR:hro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     HELRODRAFT_157038
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     HELRODRAFT_157038
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT Maestro_HEAT
Other DBs
NCBI-GeneID: 20197651
NCBI-ProteinID: XP_009018098
JGI: Helro1_157038
UniProt: T1EM51
Position
Unknown
AA seq 2273 aa
MNLDSFSFALSQIKYALTNLSKRNYKTNINEINNLVTEFGPEAERHLIRCLFSSIDFSGE
NRTGKDTFQIQFLSQEFSTFICKPNFISNLCFAVDKPLQQNVRIASKFIIFHLFTLSKTL
KLSLVQDVALGIALYHSTSETTKKFACQFLKQKFLQLINNLIESVEGGLGDAPIELLHLF
VSKLQVDSFREAIGLSFEQKELFFKTLKQVRLPTRQCSLMAASLVDTLHEVGYSFTRRTM
QEHLNNIWREELDTDVSGQSSWLHGQVETTTTTRQRHGTLKSLCTAPENWSAPSLSWKEV
TKELDHTGFYISNKHGFENLIKALHLAAVTDSNVFPIEFLYGNWKNKEGQLSWITCSLKH
PDVFCLANYAFTQVDTTCLKLTLDDKNRDIVTWKSMDLINLLLQLSEVGFHQQVHDLLKN
PMSHCPDQLLLGILQSSCWNNLKQEMICNLIPIFLSNHPNSAPIMQFTWDVQGGQSPTIR
TMVLRCMADWYMRDQHDHARLARILDVSHDLKIILHLLNGSPFPFVIDLACLASRREYLK
LDKWINDRIKEHGVREPFVEELVNFVSYRGAHLLVNKDENVVAATLGKNQQLPIEVVTSI
LSCLQHVISNRQFSSEVQESIMKLLQNIKSKQVLHQQQQPTWADHVSNLLNLNSGYHPMN
PHAHFNRALPPAGSPAKAFAMMPASMGPVASLSQMYNAANQGISSQLQGLNLHSSITNGY
SGLGAQALNTQALATQGAINPSMLGVSSVSGMAAGFPKDIEDEANLYFQRIYNNSGSSSV
SNPLSVEEALELLKNFKNSTNPRENDIYSCMMRNLFEEYRFFVQYPEKELTTTAILFGGI
IDQGLVSSYMALGVALRYVLEAVKKQQGGKMYLFGLTALDRFKTKLKDYSQYCQFLASVP
HFNDFPSKLKEYITYGAQSMDPPYSIAPSTTVTSAVISSTTTTSAISIAAVSSTMTTTQS
SSSHGAISRPPGAVRNSIANATNIDTLLANKEGLDNILVPVESLQDKVFFIFNNLSQANM
EQKALEMNEQVSEEYMPWVAQYLVMKRASVEPNFHLLYANFIEQLKRTSFLKMVVAETYR
NIKVLLRSDKGVANFSDRTLLKNLGHWLGMLMLAKNKPILHIDIDLKSLIYEAYVKGADE
LLYVIPFVAKVLESAVKSRVFKPPNPWTMGIMNCLIKLHHETDLELNLEDLESGNYLKDT
SRMETIDHQLSPSSKHHQQQHPKVPDITPPLPEERSQQMGVVAGGVGGTTASSGSMVDVP
QMPQYGYNEINALTLTGLSHHIVINEPAISLFHLQPQLKQYVRPAIERAVQELLSPAIER
AITIALKTSEIIVKKDFALDPDENRLRTAAHSFVRFMTGGMALITCHEPILISISNNLKT
MLSAALRVPSAQQKELIDHASQIIAQDNAELATVFLQKTAIDRAIPEIDKRLASDYEARR
VARSEGRCYYDQAALVAQERIPEEIRLKIGGAGSSQPSVYDEFARSIPGFLPVYAEHPSQ
VVQPQYKSVQQQQQPLAAQDVIQMYDKLAQDIEQNIPFFSGTSSPFSTFLRQLSDYIILC
RSSVRDINSAMALLQRAVENLLEGMLMLNHESAELAARFRDCHLLVLKSLQNPQIYGPQW
TNKQVTKCLMECREDIRYSIEAVQSLLQAQLVILPQYDQFLGQQVESNSNFAVIPFAMQL
VQKFFLEGHDKHAASIFRAQEGELSSTLEALQRAAMQSRGPDTLPALLESIRQQTGDVSV
MERMNLGASAMMYSGISLHEKTEYLLREWVGLYHQPAAGRDSSKAFSSFVNHMSLHGILK
TDELITRFFRLCTEMCVDLCYRALNEPNQSSTRVRFQCFHTLDAFVRLIVLLLKHSGDST
NTVTKVNLLNKAYIRHIEFHQLPYHRIFIMLFIELNAPEVIFDAINLQILQAFSNILHVL
RPSKAPGFAFAWLEIISHRVFIGRMLAVSENQKQAWGMYAQLIVDLFNFLAPFLRNADMP
KPTQLLYKGTMRVLLVLLHDFPELLCDYHYTFCDVIPSNCIQIRNLILSAFPRSMRLPDP
FTPNLKVEHLPDINTPPRVMTNFAALIQPVQLRKDLDSYLKTRSPVTFLSDLRSRLQLSN
TPGMKYNIPLLNSVVLHVGSQAIAHIQSKCQTPSTSAIAHSSHMDIFQNLAVDLDTEGRY
LFLNAMVNQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLV
TFIELIKSPLYKFWTHDFVHCAPEIEKLLESVARSCIQPKQAQAKDLESIDAR
NT seq 6822 nt   +upstreamnt  +downstreamnt
atgaatttggattcgttctcttttgctctatcacagataaaatacgctctcactaatttg
tctaagcgaaattataaaaccaacataaacgaaattaataatcttgtcactgaatttgga
ccagaagctgaacgacatttaattcgttgtcttttttcatctattgacttttcaggtgaa
aatcgaactggaaaagacactttccagatccaatttttatcacaagagttttccacattt
atctgcaaaccgaattttatttcaaacctttgttttgctgttgacaaaccactacaacaa
aatgttcgtattgcttcaaaatttataatttttcatttatttacactatccaagactctc
aaattaagtttggttcaggacgttgctcttggaattgctttgtaccattcaaccagcgaa
actaccaagaaatttgcttgccagttcctcaagcagaaatttcttcaactgatcaacaac
ctcattgaatctgtagaaggtggtctcggggacgcccctatcgagttgttgcaccttttt
gtatccaagttacaagttgactcgttcagagaagccatcggactgtcttttgaacaaaag
gaactttttttcaagactctcaaacaagtcaggctacccacaagacagtgttccttaatg
gccgccagcctggttgatactcttcatgaggttggatattcattcacacgaagaacaatg
caagagcatcttaacaacatttggcgtgaagaacttgacaccgatgtcagtggccagagt
tcttggcttcatggccaggttgagacaacaaccacgacacgccaacgtcatggaacgttg
aaatctttgtgcactgcaccagagaattggtcggcaccaagtctgtcttggaaggaggtt
acaaaggagttggatcacacgggcttctacataagtaataagcatggattcgaaaacctc
ataaaggcattacatcttgctgctgtcacagatagtaatgtctttcctatcgaatttctc
tatggaaactggaagaataaagaaggacagctatcttggataacgtgctccctgaagcac
ccggatgttttctgcctggccaattatgcattcacacaagttgatacgacgtgcctcaag
ttgactctggatgataagaacagggatatcgtaacttggaagtctatggacctcataaac
ttgctgctgcaactgtctgaggttggcttccaccagcaagttcacgatctcctgaaaaat
ccaatgtcccactgtcctgatcaactactgcttggcattttgcaatcgagttgctggaac
aatttgaagcaagaaatgatttgcaacttgattccaatcttcctcagcaaccacccgaac
tcagcgccaatcatgcagttcacatgggatgtgcagggcggccagtctccaactattagg
accatggtcctgaggtgcatggccgactggtacatgagggatcagcatgatcacgccagg
ttggctcgtattctcgatgtctcccatgacctcaagatcatattgcacttactgaatggc
tcgcccttcccgtttgtcattgacctggcttgcttggcgtcacgcagggagtacttgaag
ttggataagtggatcaacgaccgcattaaagagcatggggttagggaacctttcgtggag
gagttggtgaactttgtgagttacagaggagcacatctgctggtgaacaaagatgaaaac
gtggtagctgcaactcttggcaagaatcaacagctgccaatcgaagttgttaccagcatc
ctctcctgcctccagcacgtcatcagcaatcgccagttttcaagtgaggttcaagagtcc
atcatgaagctcttgcagaatatcaagtccaaacaagttctacatcagcagcagcaacca
acctgggctgaccacgtctcaaatttgttgaacttaaactctggctaccatcctatgaac
ccacatgcccacttcaatcgggccctccctcctgccggctctcccgctaaggcattcgcc
atgatgcccgcgtccatgggaccggtggcctccctctcacagatgtacaatgctgcaaat
cagggtatcagttcacagttgcaaggtttgaacctgcatagttccattacaaatgggtac
agcggcttaggagctcaagcactcaacactcaagccctagccactcagggagcaatcaat
ccttccatgttgggcgtgtcatccgtcagtgggatggcagctggattcccgaaagacata
gaagatgaagcgaatctctattttcagcgcatttataataattcaggatcgagttctgtg
agcaacccattgtcagttgaggaagcgttggaattgttgaaaaactttaaaaattcaact
aaccccagagagaatgacatatattcttgcatgatgcgcaatctttttgaagagtaccga
ttcttcgtgcagtaccctgagaaggagctgacgacaactgccatcctgttcggtggaatc
atcgatcagggattagtgagcagctacatggctcttggagttgcactgcgttatgttctg
gaagctgtcaagaaacagcaaggaggcaaaatgtatctctttggtctcacagctcttgat
agattcaaaaccaagttgaaagattactcacaatattgtcagtttctcgcatcagtgcca
catttcaatgacttcccatctaaacttaaagagtatataacatatggagctcagtcgatg
gacccgccgtactccatcgctccctccacgacggtcacgagtgccgtcatcagcagcacc
accaccacgtcagccatctccattgcagcagtgtcaagcacgatgacgacaacacagagt
tcaagtagtcacggagcaatttccagaccaccgggggctgttaggaactcaatagccaat
gcgacgaacattgacacgctgctggcgaacaaggagggcctagataacatattggtgcct
gtggaatcattgcaggataaggtcttcttcatattcaacaacctttcacaggctaacatg
gaacagaaggcacttgagatgaatgaacaagtgagtgaagagtacatgccttgggtggcc
cagtacctcgtcatgaagcgagccagtgttgaaccaaacttccatttactttatgccaac
ttcattgagcaactcaagagaacttccttcctcaagatggtcgttgctgaaacctatcga
aacattaaagtattgctgcgtagcgacaaaggtgtggccaacttctctgatcgcaccctc
ctaaaaaatctcggtcactggctgggaatgttgatgttggcgaagaacaaacctatacta
catatcgacattgacttgaaatcattgatttatgaggcttacgtgaaaggtgccgacgag
ctcctttacgtaataccgtttgttgcaaaagttcttgaatcagctgtcaagagccgagtt
tttaagccgcccaacccttggactatgggaataatgaattgtcttatcaaacttcatcac
gagactgacctggaactcaaccttgaagatttagaatcaggaaactatttgaaggatacc
tcacgcatggaaacgattgatcaccaactatctccgtcttccaaacaccatcagcagcag
cacccaaaagttcccgacatcactccacccctgccagaagaaaggtcacagcagatggga
gtggtggccggaggagtagggggaacgacagcctcctctggttccatggtggatgtccct
cagatgccccagtatggctacaacgagatcaacgctctcactttaaccggattgtcccac
cacattgtcataaatgagccggcaatcagtttattccatctgcaaccacaactgaagcaa
tatgtgaggcctgcaattgagagggctgtccaggaattgctctctccagctattgaacgt
gccatcaccattgctctcaaaacttctgaaataattgtcaagaaggactttgcactggac
ccagatgagaaccgactgcggacggctgcccacagttttgtgaggttcatgacgggtgga
atggcgctcataacgtgccacgaaccaatcctgatcagcatctcaaacaacttgaagacc
atgctatctgccgcacttcgggtgcccagcgctcagcagaaggagttaatagaccatgcc
tcgcagatcatcgctcaggacaatgcggagttggccactgtgttcctccagaagaccgcc
atcgaccgtgccattccggagattgataagaggcttgcgtctgattacgaagctcgccga
gttgcccgcagtgaaggcagatgctactacgaccaggcagccctcgttgcacaggaacga
ataccagaggaaataagattgaagatcggtggtgcaggaagcagccagccgtcggtttat
gatgaatttgcaaggtccattcctggctttttaccggtatatgcagaacacccatcccag
gtcgtacagcctcagtacaagtctgttcagcagcagcagcagccactagcggcacaagat
gttattcagatgtacgataaattggctcaggacatcgagcagaacatcccgttttttagc
ggcaccagcagtcctttcagtacgttcctcagacagctttcagactatatcatcctctgt
aggtcgtctgtcagggatatcaattctgccatggctttgttgcagagagcagtcgagaac
ttattggaagggatgttgatgttgaaccacgagtcagcagaacttgcagccagattccgt
gattgccacctccttgtactcaagtcactgcagaacccgcaaatctatgggccacagtgg
accaacaagcaagttacaaaatgtctgatggaatgccgtgaggacatcaggtacagcatt
gaggcagtgcaatcacttctgcaagcccaactcgttatccttccacaatatgatcagttc
ttgggacagcaggttgaatccaactccaactttgctgtcatcccgttcgccatgcaactc
gttcagaagttcttcttggaaggccacgacaaacatgcggcgagcatcttcagagcacaa
gagggagagctgagtagtacgttggaggccctgcagagagctgccatgcaatcaagagga
cctgataccttgccggcactgttggagtcgatccgtcagcagacaggcgacgtcagcgtc
atggagaggatgaacctcggagcatcggccatgatgtactcgggcatcagtctgcatgag
aagactgaatacttgctaagagaatgggtgggattgtatcatcagccagctgccggcagg
gatagttcaaaagcattcagctcctttgtcaatcatatgtcattgcatggtatcttgaaa
actgatgaactcatcacaagattcttcagactctgcactgaaatgtgtgtcgacctctgc
tacagagctctcaatgagcctaatcagagttcaacgagggtgagatttcaatgttttcat
acgttggatgccttcgtgaggctgatcgtgctcctactcaagcattcaggagattcaacg
aacactgtcaccaaagttaatctcctcaataaggcatatattcgacacatagagttccat
cagcttccttaccatcgcatattcataatgctgttcattgaattaaacgctcctgaagtt
atctttgacgccatcaacttgcagatcctgcaggcattcagcaacattcttcatgtcctg
agaccgtcgaaggcgccagggttcgcgtttgcctggctcgaaatcatctcccaccgtgtc
ttcatcggccgcatgctggctgtgtcagaaaatcagaagcaagcatggggcatgtacgca
cagctgatcgtcgacctcttcaatttcctcgctcccttcctcagaaatgcagacatgccg
aagccaacacaactgctctataagggtacgatgagggtcctgttggttctgcttcatgat
ttcccagaactgctgtgtgactaccactacacattctgcgacgtcatcccatcgaactgc
atacagatcagaaatttgatactgagtgcatttcctcgttccatgcgtcttcctgaccct
ttcactcccaacttgaaggtcgaacatcttccagacatcaacaccccaccgagagttatg
accaattttgctgctctcatacaaccagtgcaactcaggaaggacttggactcctacctg
aagacgaggtcgcctgttactttcctgtcggatctcaggagcagattgcagctgtcgaac
acgcctggcatgaagtacaacatccccctcttgaacagcgtcgtcctacacgtgggcagc
caggccatcgcccacatacagagcaagtgccagacgccgagcaccagcgccatcgcccac
tcctctcatatggacatcttccagaatctcgccgtcgacctcgacactgaaggtcgctac
ttgttcctgaatgcaatggtgaaccagttgcgctatccaaatagccacacgcactacttc
agttgcacgctgctctacttattcgcggaggccaacacggaggccatccaggagcagatt
acgagagtgctactcgagaggttgatcgtcaacagaccacacccctggggactccttgtg
accttcatcgaactcatcaagagtcctctctacaagttctggacccacgactttgttcac
tgtgctccagaaatcgagaagttgctggagtcagttgcaagatcttgcattcaaccaaaa
caggctcaggctaaagatttggaaagcattgatgccagataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (73)   
   KEGG ORTHOLOGY (1)   
   RefGene (68)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (86)   

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