KEGG   Helobdella robusta: HELRODRAFT_193079
Entry
HELRODRAFT_193079 CDS       T03272                                 
Name
(RefSeq) hypothetical protein
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
hro  Helobdella robusta
Pathway
hro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HELRODRAFT_193079
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hro03019]
    HELRODRAFT_193079
Enzymes [BR:hro01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     HELRODRAFT_193079
Messenger RNA biogenesis [BR:hro03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     HELRODRAFT_193079
SSDB
Motif
Pfam: CAF1 RNA_bind
Other DBs
NCBI-GeneID: 20212513
NCBI-ProteinID: XP_009023768
JGI: Helro1_193079
UniProt: T1FUL7
Position
Unknown
AA seq 553 aa
MEITRENFENDFNLIKSSIERASFITIDTEFTGLDDGSHDYITSFDTPEERYKKLLKPAK
EFLIIQFGISAFIKKSEKYEYEVESYSFYLFPQSSKLLPDVVFSCQSSSLSFLVSRGMDF
GKVINKGVSYISFENEKKLLETLAMKYENNNKNNSTPQQHSQSLTSRGNNLLSPPSTPQS
LTAVPVLQQSFIDRQLKSVESFLSATSSSSLQLTSPVTSPSSSSVTSSTSSSFFADEWMT
LEPCSAFSRKLLYEQLNLRFPDRLYLETIAHRGQGSSSGCLKVVKIQNAEHRKCLEMKKQ
KAEYDELTKAVGFTKVIKLLHQSDKLIIGHNMLLDVMHIIGQFWVDLPLEYESFKTLTHL
LFPSSNSSLESLYTDLKASSKIPKVSIGSVLVSLIDDQSALISLNDKEQSVNVKKQLAAC
RSQWFRLQSYADWYNSSVKNKNNNNNDNNNKLKVAGNDEVQVGSAFKRKFNVDHFNGKKV
NAKKRIKMTAVTSSSSTTTLNKTTAVVMATKPSTTTTSLAPPPPLITSLITSSVSAEPTT
LNVHAMFEIPDWK
NT seq 1662 nt   +upstreamnt  +downstreamnt
atggagatcactcgagagaactttgaaaatgatttcaatctgatcaaaagttccattgaa
cgtgcatcattcattacaattgacactgaatttactggcttggatgatggcagccatgat
tacatcaccagttttgatacacccgaggaaagatacaagaaattattaaagccggccaaa
gaattcctaataatacagtttggaataagtgctttcattaaaaagtctgaaaaatatgaa
tacgaggtagagtcctatagcttctatctatttcctcaatcttccaaattgctaccggac
gttgttttctcttgccagagttcctcgctgagctttctggtatcaagaggcatggatttt
gggaaagttataaataaaggtgtttcctacatatcgtttgaaaacgagaaaaaacttctt
gaaacgctggccatgaaatacgagaacaacaacaagaacaacagcaccccgcaacaacac
agccaatcgttgactagtagaggcaataatttgttgtcgccaccgtcaacgccacagtcg
ttaacagccgttcccgtgctacagcaaagttttattgatagacaattgaaaagcgtggag
tcatttctgtcggccacgtcgtcgtcatcgttgcaattgacgtcaccagtgacgtcaccg
tcgtcatcatcggtgacgtcatcaacatcatcgtcattctttgctgatgagtggatgacc
ttagagccatgcagcgcgttctccagaaagttgctctacgaacaactgaacttgcgattc
ccggatcgtctgtatctagagacgatagcgcatagaggtcagggtagcagctctggttgc
ttgaaagtggtcaagattcaaaatgctgagcaccggaagtgtctcgagatgaagaaacaa
aaggccgaatatgacgagttgaccaaagctgtcggcttcacaaaagtcatcaagttactc
catcaatcagataagctaataataggccacaacatgttgctggatgtcatgcatatcatt
ggtcagttctgggtcgatctgccattggagtatgaatcatttaaaactctcactcaccta
ctctttcctagctcaaatagcagtctggaaagtttgtacacggatctcaaagcctcatcg
aaaattcccaaagtttcaattggcagcgtgcttgtcagtctgatagacgaccaatcagct
ctcatcagccttaacgacaaggagcagtcagttaatgtgaagaaacagcttgcagcctgt
agaagccagtggttccgcttgcagtcctacgctgactggtacaacagtagcgttaaaaat
aaaaataataataataatgataataataataaattaaaagtggcgggaaatgacgaggtt
caagtcggaagcgccttcaagaggaagtttaatgttgatcattttaatggtaaaaaagtt
aacgcaaagaagaggatcaaaatgactgcagtgacgtcatcatcgtcgactactacttta
aacaaaacgactgctgtggtaatggcgacaaaaccatcaacaacaacaacatccttagca
cccccgccaccactaataacgtcactgattacgtcatcagtgtcagctgaaccaacgaca
ctaaatgttcatgccatgtttgaaatcccagattggaaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (33)   

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