KEGG   Helobdella robusta: HELRODRAFT_97810
Entry
HELRODRAFT_97810  CDS       T03272                                 
Name
(RefSeq) hypothetical protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
hro  Helobdella robusta
Pathway
hro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HELRODRAFT_97810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hro03019]
    HELRODRAFT_97810
Enzymes [BR:hro01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     HELRODRAFT_97810
Messenger RNA biogenesis [BR:hro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     HELRODRAFT_97810
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     HELRODRAFT_97810
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1
Other DBs
NCBI-GeneID: 20217738
NCBI-ProteinID: XP_009012897
JGI: Helro1_97810
UniProt: T1G9J1
Position
Unknown
AA seq 670 aa
MHPSSSLKLLTQAQKTWERNNSGGSYQDHYQPQHFHQHNNSMLATSSQNQQGYHHNNSHH
HHHSASSTSSSSNASRSHNSTPKQFRHKVSVNHSWTELEITGTYHHYCTGLYDDDTFGET
EFWYEEGGDIIGDAHGNISNLSPAVFKFTHLTKLNLRNNNLTSLPPEIARLVNLNVLDAT
GNRLQSIPPEVGDMVMLKELYLGNNLLKSIPYELGKLFQLQRLCFKGNPLPSKYLNFNTD
ASGTQKLVSFLFDHLPAYFSSPPERAWMRLSNCETPKPAVITVMCYNVLCDKNCNRTLYA
YCPQWALNWDYRKKIVMREIKSCQSDIICLQEVETEHYHQFFQPELENDGYLSVFAPKSR
ARTMTEAEKRHVDGCAIFYKKNKFRALKDYLVEFNQVAIEAAEGSHDMINRVMTKDNIGL
AVLLETTKETWPNGPPADNQINQPLLVATCHVHWDPEYCDVKLIQTMMLVQKLQNIVKLA
ASELRPDLADSPLLDCNSIPLILCGDLNSLPDSGGVEFLKWGRVDSNHKDFKKMGYKECL
QKLGYQEAKDNIFSHNFKLSQAYINDIMPYTNYTFEFKGVIDYIFFSRDCMRCLGVLGPP
DQKWFLENKVHGCPHPQVPSDHLPIFAQLELLRSSLIPYSYPTSNMSSLANSSSSNVGFQ
QQQQQIIKNS
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgcacccctcaagttctttgaaacttctgacccaagcacaaaaaacatgggaaaggaac
aactcgggtggctcttaccaggaccactaccagccacaacacttccatcaacacaataac
agcatgcttgcgacttcttctcaaaaccagcagggttatcatcataacaacagccatcat
catcatcattctgcgtcctctacaagtagcagcagcaatgcctcaaggtcacataactct
acacccaagcagtttcgccacaaagtttctgtcaaccacagttggacggagctggaaata
accggtacatatcatcattattgcacggggctgtatgatgatgatacatttggtgaaact
gaattttggtatgaggaggggggagatattattggagatgcacatggtaacatatccaat
ctgagccctgctgtattcaagttcacccatctaacgaagcttaaccttcgtaacaacaac
ttaacctctctgcctcccgaaattgctcgtctggtcaatctaaacgtactcgatgctaca
ggaaaccgactgcaaagcattccaccagaagttggtgacatggtgatgttgaaggaactc
tacttaggtaacaacctgctgaaatctattccatacgagctgggcaagctatttcaacta
cagagattatgttttaaaggcaatccgctaccaagcaagtacctaaattttaacactgat
gcttcagggacccagaaattagtctccttcctatttgatcatttaccagcttatttttca
agcccgccagaaagagcatggatgcgtttgtcgaactgtgaaacgccaaagcctgcagtg
ataacagtgatgtgctataacgtgctttgcgacaaaaactgcaacagaacgctgtacgcg
tactgtccacagtgggcactgaactgggattacaggaagaagattgtaatgagagagatt
aagagttgtcaatcggatattatttgcttgcaggaagtggagacggaacactaccaccaa
ttcttccagcctgagttggaaaatgacggatacctgagcgtgtttgccccaaaaagtcga
gcaagaacgatgacggaggcagagaagaggcatgtcgatggttgcgccatcttttataaa
aaaaataaattccgtgccctgaaagactacttagtagagttcaaccaggtagccatcgag
gcagccgagggctcacacgacatgatcaaccgcgtcatgaccaaagacaacatcgggctg
gccgtacttctagaaaccaccaaagaaacttggcctaatggtcctccagccgacaaccag
atcaaccagcccttactggtggccacgtgtcacgtgcactgggacccagagtattgcgac
gtcaaactcatccagactatgatgcttgtgcagaagttgcagaacatcgtgaaattggca
gcttcagagttgaggcccgacctggccgacagtcccctgctcgactgcaactccatccct
ctcatactctgcggagacttgaactctctgcccgattcaggtggagtggagtttttgaaa
tggggccgagttgactcaaaccacaaggatttcaaaaagatgggatacaaggagtgcctg
cagaagttaggctaccaggaggccaaggacaacatcttctcgcacaacttcaagctctca
caggcctacatcaacgacatcatgccttataccaattacacgtttgagttcaaaggagta
atcgattacatcttcttcagtcgagattgcatgcgatgcctgggcgtgctgggcccccct
gaccagaagtggtttctcgaaaacaaagttcacggatgcccccacccacaagtaccctcc
gaccatctgccgatcttcgcccaactcgagctcttaagatcctcacttattccttattcc
tatcccaccagtaacatgtcgtctcttgctaactcgtcgtcttccaatgtcggcttccag
cagcagcagcaacaaattattaaaaattcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (68)   

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