KEGG   Homo sapiens (human): 10898
Entry
10898             CDS       T01001                                 
Symbol
CPSF4, CPSF30, NAR, NEB-1, NEB1
Name
(RefSeq) cleavage and polyadenylation specific factor 4
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
hsa  Homo sapiens (human)
Pathway
hsa03015  mRNA surveillance pathway
hsa05164  Influenza A
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    10898 (CPSF4)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    10898 (CPSF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsa03021]
    10898 (CPSF4)
   03019 Messenger RNA biogenesis [BR:hsa03019]
    10898 (CPSF4)
Transcription machinery [BR:hsa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     10898 (CPSF4)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     10898 (CPSF4)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_3 Torus zf-CCCH_2 zf-CCHC zf-CCCH_4 zf-C3H1 zf-CCHC_3 Nab2-like_zf-CCCH_
Other DBs
NCBI-GeneID: 10898
NCBI-ProteinID: NP_006684
OMIM: 603052
HGNC: 2327
Ensembl: ENSG00000160917
UniProt: O95639
Structure
Position
7:99438943..99457373
AA seq 269 aa
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP
LPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRPL
EQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcaggaaatcatcgccagcgtggaccacatcaagtttgacttggagatcgcggtggag
cagcagctgggggcgcagccgctgcccttccccggcatggacaagtcgggcgctgctgtc
tgtgaattctttttgaaagctgcctgcggcaaagggggcatgtgtccgtttcgccacatc
agtggtgagaagacagttgtgtgcaaacactggctgcgtggcctatgcaagaaaggggac
cagtgtgagttcctgcatgagtatgacatgaccaagatgcccgagtgctacttctactcc
aagttcggggagtgcagcaacaaggaatgtcccttcctgcacatcgaccccgagtccaag
atcaaggactgtccttggtatgaccgtggcttctgcaagcacggtcccctctgcaggcac
cggcacacacggagagtcatctgtgtgaattacctcgtgggattctgcccggaggggccc
tcgtgtaaattcatgcaccctcgatttgaactgcccatgggaaccaccgagcagccccca
ctgccgcagcagacacagcctccagcaaagcaaagtaacaatccgccattacaaaggtcg
tcctccttgatccagttaacgagtcagaactcttctcccaatcagcagagaaccccgcag
gtcatcggggtcatgcagagtcaaaacagcagcgcgggcaaccggggaccccggccactg
gagcaggtcacctgttacaagtgtggcgagaaaggacactacgccaacagatgcaccaaa
gggcacttggcctttctcagtggacagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (23)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (21)   
DNA sequence (51)   
   RefSeq(nuc) (21)   
   GenBank (15)   
   EMBL (15)   
3D Structure (11)   
   PDB (11)   
Protein domain (10)   
   Pfam (10)   
All databases (118)   

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