KEGG   Homo sapiens (human): 11107
Entry
11107             CDS       T01001                                 
Symbol
PRDM5, BCS2, PFM2
Name
(RefSeq) PR/SET domain 5
  KO
K22534  PR domain zinc finger protein 5 [EC:2.1.1.-]
Organism
hsa  Homo sapiens (human)
Disease
H01902  Brittle cornea syndrome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsa03000]
    11107 (PRDM5)
Transcription factors [BR:hsa03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    11107 (PRDM5)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-C2H2_jaz PRDM2_PR zf-C2H2_6 zf-met zf-C2H2_11 zf-Di19 SET Trm112p DUF4428 Bflower_2 zf-C2HC_2 zf-C2H2_3rep zf-C2H2_8 PriA_CRR Zap1_zf1 zinc_ribbon_9
Other DBs
NCBI-GeneID: 11107
NCBI-ProteinID: NP_061169
OMIM: 614161
HGNC: 9349
Ensembl: ENSG00000138738
UniProt: Q9NQX1
Structure
Position
4:complement(120684291..120922726)
AA seq 630 aa
MLGMYVPDRFSLKSSRVQDGMGLYTARRVRKGEKFGPFAGEKRMPEDLDENMDYRLMWEV
RGSKGEVLYILDATNPRHSNWLRFVHEAPSQEQKNLAAIQEGENIFYLAVEDIETDTELL
IGYLDSDMEAEEEEQQIMTVIKEGEVENSRRQSTAGRKDRLGCKEDYACPQCESSFTSED
ILAEHLQTLHQKPTEEKEFKCKNCGKKFPVKQALQRHVLQCTAKSSLKESSRSFQCSVCN
SSFSSASSFEQHQETCRGDARFVCKADSCGKRLKSKDALKRHQENVHTGDPKKKLICSVC
NKKCSSASSLQEHRKIHEIFDCQECMKKFISANQLKRHMITHSEKRPYNCEICNKSFKRL
DQVGAHKVIHSEDKPYKCKLCGKGFAHRNVYKNHKKTHSEERPFQCEECKALFRTPFSLQ
RHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHK
KTHTGEKEKICPYCGQKFASSGTLRVHIRSHTGERPYQCPYCEKGFSKNDGLKMHIRTHT
REKPYKCSECSKAFSQKRGLDEHKRTHTGEKPFQCDVCDLAFSLKKMLIRHKMTHNPNRP
LAECQFCHKKFTRNDYLKVHMDNIHGVADS
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgctgggcatgtacgtgccggacaggttctccctgaagtcctcccgggttcaggacggc
atggggctctacacggcccgcagagtgcgaaagggtgaaaagttcggaccctttgctgga
gagaagagaatgcctgaagacttggatgaaaatatggattacaggttgatgtgggaggtt
cgtgggagtaagggagaagttttgtacattttggatgctaccaacccacggcactccaac
tggcttcgcttcgttcatgaggcaccatctcaggagcagaagaacttggctgccattcaa
gaaggagaaaacattttctatttggcagttgaagatatagaaacagacacggagcttctg
attggctacctggatagtgacatggaggctgaggaggaagaacagcaaattatgacagtc
atcaaagaaggggaagttgaaaattctagaagacaatcaacagcgggcagaaaagatcgc
cttggctgtaaagaggactatgcttgtcctcaatgtgaatcgagttttaccagtgaggat
attcttgctgagcatctccagacattgcaccagaaacccacagaggagaaagaatttaag
tgcaagaactgtgggaagaaattcccagttaagcaggctttgcaaagacatgttcttcag
tgcacagcgaaaagcagtctaaaggagtcttcgcgaagttttcagtgctctgtttgcaat
tcttccttcagttcagcatcgagttttgagcagcaccaggagacttgccggggggatgcc
aggtttgtgtgcaaggctgacagctgtggaaagaggctgaagagcaaggatgccctgaaa
agacaccaggaaaatgtccacactggagatcctaagaaaaagcttatatgttcagtgtgc
aataaaaagtgttcttcagcatcaagcctacaggaacatagaaagattcatgagatattt
gattgtcaagaatgtatgaagaaatttatttcagctaatcagctaaaacgtcatatgatc
acccactcagaaaaacgaccctataattgcgagatttgtaataagtctttcaagaggctt
gatcaagtgggtgctcacaaagtaatacacagcgaagacaaaccttacaaatgcaaactt
tgtggaaagggatttgcccacagaaatgtttacaagaatcataagaagacccactctgag
gagagaccgttccaatgtgaagaatgtaaagctttgttccggaccccattttctttacag
agacacctgctaatacataacagtgagaggactttcaagtgccatcactgcgatgctacc
tttaagaggaaggatacattaaatgttcatgtccaggtggttcatgaaagacacaagaag
tataggtgtgagctatgtaataaggcctttgttacaccttcagtgcttagaagtcataag
aaaacacatacaggagaaaaggagaaaatctgtccatattgtggccagaaatttgccagc
agtggtacactcagagttcatatccggagccacacaggtgagcgtccctatcaatgtcct
tactgtgaaaaaggattcagtaaaaatgatggactgaagatgcacattcgtactcacacc
agggagaagccgtacaagtgctcagagtgcagcaaggccttcagccagaagcgaggcctg
gatgagcacaagaggacgcacactggagaaaagccttttcagtgtgatgtttgtgatttg
gcttttagcctgaagaaaatgctgattcgacacaagatgactcataatcccaatcgtccc
ctggcagaatgccagttttgccataagaagtttacaaggaatgactacctcaaagtgcac
atggacaatatccatggtgtagctgacagctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Disease (3)   
   KEGG DISEASE (1)   
   OMIM (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (37)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (35)   
DNA sequence (63)   
   RefSeq(nuc) (41)   
   GenBank (11)   
   EMBL (11)   
3D Structure (1)   
   PDB (1)   
Protein domain (19)   
   Pfam (19)   
All databases (152)   

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