KEGG   Homo sapiens (human): 11108
Entry
11108             CDS       T01001                                 
Symbol
PRDM4, PFM1
Name
(RefSeq) PR/SET domain 4
  KO
K12463  PR domain zinc finger protein 4 [EC:2.1.1.-]
Organism
hsa  Homo sapiens (human)
Pathway
hsa04722  Neurotrophin signaling pathway
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09150 Organismal Systems
  09156 Nervous system
   04722 Neurotrophin signaling pathway
    11108 (PRDM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsa03000]
    11108 (PRDM4)
Transcription factors [BR:hsa03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    11108 (PRDM4)
SSDB
Motif
Pfam: PRDM2_PR zf-H2C2_2 Zn_ribbon_PRDM4 zf-C2H2 zf-C2H2_4 C2CH-3rd_BIRD-IDD zf-C2H2_16 SET zf-met zf-C2H2_jaz Zn_ribbon_Com
Other DBs
NCBI-GeneID: 11108
NCBI-ProteinID: NP_036538
OMIM: 605780
HGNC: 9348
Ensembl: ENSG00000110851
UniProt: Q9UKN5 B3KPI0
Structure
Position
12:complement(107732871..107761137)
AA seq 801 aa
MHHRMNEMNLSPVGMEQLTSSSVSNALPVSGSHLGLAASPTHSAIPAPGLPVAIPNLGPS
LSSLPSALSLMLPMGIGDRGVMCGLPERNYTLPPPPYPHLESSYFRTILPGILSYLADRP
PPQYIHPNSINVDGNTALSITNNPSALDPYQSNGNVGLEPGIVSIDSRSVNTHGAQSLHP
SDGHEVALDTAITMENVSRVTSPISTDGMAEELTMDGVAGEHSQIPNGSRSHEPLSVDSV
SNNLAADAVGHGGVIPMHGNGLELPVVMETDHIASRVNGMSDSALSDSIHTVAMSTNSVS
VALSTSHNLASLESVSLHEVGLSLEPVAVSSITQEVAMGTGHVDVSSDSLSFVSPSLQME
DSNSNKENMATLFTIWCTLCDRAYPSDCPEHGPVTFVPDTPIESRARLSLPKQLVLRQSI
VGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHNGVLEFCIITTD
ENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQIGVPE
HPDVHLCNCGKECNSYTEFKAHLTSHIHNHLPTQGHSGSHGPSHSKERKWKCSMCPQAFI
SPSKLHVHFMGHMGMKPHKCDFCSKAFSDPSNLRTHLKIHTGQKNYRCTLCDKSFTQKAH
LESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVLIHTQERQIKCPKCDKLFLRTNHLKKH
LNSHEGKRDYVCEKCTKAYLTKYHLTRHLKTCKGPTSSSSAPEEEEEDDSEEEDLADSVG
TEDCRINSAVYSADESLSAHK
NT seq 2406 nt   +upstreamnt  +downstreamnt
atgcatcacaggatgaatgaaatgaacctgagtccagtggggatggagcagctgacttca
tcctctgtgagcaatgccttgccagtctcaggaagtcacctgggattggctgcctcaccc
actcacagtgccatccctgccccaggcctcccagtggcaattccaaacctgggtccctcc
ctgagctctctgccttctgctctgtctttaatgctaccaatgggtattggggatcgaggg
gtgatgtgtgggttacctgaaagaaactacaccctacctccaccaccttaccctcacctg
gagagcagttatttcagaaccattctacctggcattttatcttatttagctgacagacca
cctccacagtacatccaccctaactctataaatgttgatggtaatacagcattatctatc
accaataacccttcagcactagatccctatcagtccaatggaaatgttggattagaacca
ggcattgtttcaatagactctcgctctgtgaacacacatggtgcccaaagtcttcatccc
agtgatggccatgaggtggccttggacacagcaatcactatggagaacgtttctagggtt
accagcccaatttcgacagatggaatggcagaggagcttacgatggacggtgttgcaggc
gagcattcccaaatcccaaatggctccagaagtcatgaacctctgtctgtggattctgtg
agcaacaaccttgcagcagacgctgtaggacatggtggtgtgatacccatgcatgggaat
ggcctggagctccctgtggtcatggagacagaccacattgcaagtcgggtcaatggcatg
tctgacagtgccctcagtgactccattcacactgtggccatgagcaccaactctgtaagc
gtggcactctctacctcacacaaccttgcctccctagaatctgtttccctccatgaagtt
ggcctcagcctagaacctgtggctgtctcctccatcacccaggaggttgctatggggaca
ggtcatgtagatgtatcttcagacagtctttcttttgtatcaccttcactgcaaatggaa
gactccaattcaaacaaggagaacatggcaaccttgtttacaatttggtgtactctgtgt
gaccgcgcctatccctcggactgtcccgaacatggaccagtgacttttgttcctgacact
ccaatagagagcagagcaaggctttctctcccaaagcagcttgttctccgtcagtcaatt
gtgggagcagaagttggtgtatggactggagaaaccattcctgtgcggacttgctttgga
cctctaattggccagcagagtcactccatggaagtagcagaatggacagacaaggcagtt
aaccatatctggaagatataccacaatggtgtcctagaattctgcatcattacaactgat
gaaaatgaatgtaattggatgatgtttgtgcgcaaagccaggaaccgggaagagcagaat
ttggtggcttatcctcatgatggaaaaatctttttctgcacctcacaagatatccctcct
gaaaatgaactgcttttttattatagccgagattatgctcaacagattggtgttcctgaa
cacccagatgtgcatctctgtaactgtggcaaggagtgcaattcttacacagagttcaaa
gcccatctgaccagccacatccataaccatcttcctacccagggacatagcggcagccat
gggccaagtcacagcaaagaaaggaagtggaagtgctcaatgtgcccccaagcttttatc
tctccttccaaacttcatgtccactttatgggtcacatgggtatgaagccccacaagtgt
gatttctgtagcaaggcttttagtgatcccagcaacctgcggacccacctcaagatacat
acaggtcagaagaactacaggtgtaccttgtgtgacaagtctttcacccagaaggctcac
ctggagtcccacatggttatccacactggggagaagaatcttaagtgtgattactgtgac
aagttgtttatgcggaggcaggacctcaagcagcacgtgctcatccacactcaagaacgc
cagatcaagtgtcccaagtgtgataagctgttcttgagaacaaatcacttaaagaagcat
ctcaattctcatgaaggaaaacgggattatgtctgtgaaaaatgtacaaaggcttatcta
accaaataccatctcacccgccacctgaaaacctgcaaagggcccacctccagttcgtca
gcaccagaggaggaagaagaggatgactcagaagaggaagatctagcagactctgtgggg
acagaagactgtaggattaacagtgctgtgtattcagcggatgagtctctttctgcacat
aaataa

  All links  
Disease (1)   
   OMIM (1)   
Gene (29)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (17)   
   RefSeq(nuc) (5)   
   GenBank (6)   
   EMBL (6)   
3D Structure (2)   
   PDB (2)   
Protein domain (11)   
   Pfam (11)   
All databases (68)   

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