KEGG   Homo sapiens (human): 1477
Entry
1477              CDS       T01001                                 
Symbol
CSTF1, CstF-50, CstFp50
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
hsa  Homo sapiens (human)
Pathway
hsa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    1477 (CSTF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    1477 (CSTF1)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     1477 (CSTF1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WDR55 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_NOL10_N Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_VPS8 ASA1 Beta-prop_EIPR1 Beta-prop_DCAF4 PAC11 WDR90_beta-prop_4th Beta-prop_Aladin CFAP251_N Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_NWD2_C DSE1_N Beta-prop_NUP159_NUP214 Ge1_WD40 Frtz Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_SPT8
Other DBs
NCBI-GeneID: 1477
NCBI-ProteinID: NP_001028693
OMIM: 600369
HGNC: 2483
UniProt: Q05048
Structure
Position
20:56392379..56406362
AA seq 431 aa
MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMEN
DDTAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPT
LRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAV
FNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRSTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtacagaaccaaagtgggcttgaaggaccgccagcagctctacaagctgatcattagc
cagctgctatatgacggctacatcagcatcgccaatggcctcatcaatgaaatcaagcct
cagtctgtgtgtgcaccctcggagcagctcctgcatctcatcaaactcggaatggaaaac
gatgacaccgcagttcagtatgcaattggtcgttcagatactgttgcccctggcacaggg
attgacctggaatttgatgcagatgttcagactatgtccccagaggcttctgagtacgaa
acatgctatgtcacatcacataaaggaccatgccgtgtagctacctatagtagagatgga
cagttaatagctactgggtctgctgatgcttcgataaagatacttgacacagagaggatg
ttggccaaaagtgccatgccaatagaggtcatgatgaatgagaccgcacaacaaaatatg
gaaaaccacccagtgattcgaactctttatgaccatgtggatgaagtcacgtgccttgct
ttccacccaacagaacagatcctggcttctggttcaagggattatactcttaaattattt
gattattccaaaccatcagcaaaaagagccttcaaatacattcaggaagctgaaatgtta
cgttccatctcttttcatccttctggagactttatacttgtcggaactcagcatcctact
cttcgcctttatgatatcaacacctttcaatgttttgtctcttgcaatcctcaagatcaa
cacaccgatgctatatgttccgttaattacaattctagtgccaatatgtacgtaactgga
agcaaggacggctgcatcaaattatgggatggtgtttcaaatcgatgcatcacaactttt
gagaaagcacatgacggtgctgaagtttgttctgccattttttccaaaaattctaaatac
attctctcaagtggaaaagactctgtagctaaactttgggaaatatcaacgggacgaaca
ctggtcagatacacgggcgcgggtttaagtggacgccaggtgcaccggacacaggctgtg
tttaaccacaccgaggactatgtgttgctgcccgacgagaggacgatcagtctttgctgc
tgggactcgaggacagccgagcggagaaacctgctgtcgttggggcacaacaatattgta
cgctgcatagtgcactcccccaccaaccccgggttcatgacgtgcagcgatgacttcaga
gcgcggttttggtaccggagatcgaccactgactga

  All links  
Disease (1)   
   OMIM (1)   
Gene (20)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (33)   
   RefSeq(nuc) (5)   
   GenBank (14)   
   EMBL (14)   
3D Structure (1)   
   PDB (1)   
Protein domain (45)   
   Pfam (45)   
All databases (107)   

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