KEGG   Homo sapiens (human): 255631Help
Entry
255631            CDS       T01001                                 

Gene name
COL24A1
Definition
(RefSeq) collagen type XXIV alpha 1 chain
  KO
K19721  collagen, type V/XI/XXIV/XXVII, alpha
Organism
hsa  Homo sapiens (human)
Pathway
hsa04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    255631 (COL24A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:hsa00536]
    255631 (COL24A1)
Glycosaminoglycan binding proteins [BR:hsa00536]
 Heparan sulfate/Haparin
  Extracellular matrix molecules
   255631 (COL24A1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3
Motif
Other DBs
NCBI-GeneID: 255631
NCBI-ProteinID: NP_690850
OMIM: 610025
HGNC: 20821
Ensembl: ENSG00000171502
Vega: OTTHUMG00000010629
Pharos: Q17RW2(Tdark)
UniProt: Q17RW2
Position
1p22.3
AA seq 1714 aa AA seqDB search
MHLRAHRTRRGKVSPTAKTKSLLHFIVLCVAGVVVHAQEQGIDILHQLGLGGKDVRHSSP
ATAVPSASTPLPQGVHLTESGVIFKNDAYIETPFVKILPVNLGQPFTILTGLQSHRVNNA
FLFSIRNKNRLQLGVQLLPKKLVVHIRGKQPAVFNYSVHDEQWHSFAITIRNQSVSMFVE
CGKKYFSTETIPEVQTFDSNSVFTLGSMNNNSIHFEGIVCQLDIIPSAEASADYCRYVKQ
QCRQADKYQPETSIPCTTLIPTKIPEHSPPPKLFAEKVLSEDTFTEGKSIPNIIKNDSET
VYKRQEHQISRSQLSSLQSGNVSAVDLTNHGIQAKEMITEEDTQTNFSLSVTTHRISEAK
MNTKEKFSSLLNMSDNITQHDDRVTGLSLFKKMPSILPQIKQDTITNLKKAITANLHTNE
LMEMQPILNTSLHRVTNEPSVDNHLDLRKEGEFYPDATYPIENSYETELYDYYYYEDLNT
MLEMEYLRGPKGDTGPPGPPGPAGIPGPSGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPG
FSPGQPVPGEKGDQGLSGLMGPPGMQGDKGLKGHPGLPGLPGEQGIPGFAGNIGSPGYPG
RQGLAGPEGNPGPKGAQGFIGSPGEAGQLGPEGERGIPGIRGKKGFKGRQGFPGDFGDRG
PAGLDGSPGLVGGTGPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQG
TAGELGEPGYPGDKGAVGLPGPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPG
QNGPEGPKGLLGNRGPPGPPGLKGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKG
EVGDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPG
PIGPLGLPGHVGARGPPGSQGPKGQRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIG
KTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPGLRGLQGDVGPPGEMGMEGPPGTEGESG
LQGEPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKG
EMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIG
KSGPKGARGTRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVL
GPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGPPGEPGDQGEQGLKGER
GSEGNKGKKGAPGPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIR
GGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPC
GDPGLKGQPGEYGVQGLTGFQGFPGPKGPEGDAGIVGISGPKGPIGHRGNTGPLGREGII
GPTGRTGPRGEKGFRGETGPQGPRGQPGPPGPPGAPGPRKQMDINAAIQALIESNTALQM
ESYQNTEVTLIDHSEEIFKTLNYLSNLLHSIKNPLGTRDNPARICKDLLNCEQKVSDGKY
WIDPNLGCPSDAIEVFCNFSAGGQTCLPPVSVTKLEFGVGKVQMNFLHLLSSEATHIITI
HCLNTPRWTSTQTSGPGLPIGFKGWNGQIFKVNTLLEPKVLSDDCKIQDGSWHKATFLFH
TQEPNQLPVIEVQKLPHLKTERKYYIDSSSVCFL
NT seq 5145 nt NT seq  +upstreamnt  +downstreamnt
atgcatttaagagcccacagaacaaggcgtggaaaagtctcccccacggcaaaaacgaaa
tcacttcttcattttattgtactatgtgtggctggggtggttgttcatgcacaagaacaa
ggcatagatattcttcatcaactaggccttggaggcaaagacgtaagacactcatcacca
gcgactgctgtaccatcagcatctacaccgttacctcagggggtccatttaacagaatca
ggagtcatttttaaaaatgatgcttatatcgagacacctttcgtgaaaattttaccagtc
aacttggggcagccgtttacaatattaactgggttacagtcacatcgggtgaacaatgca
tttctcttcagcattagaaataaaaatagactgcaattaggagtacaattactacctaaa
aaattagtagtacacattagaggaaagcagcctgcagttttcaactacagtgttcatgat
gagcaatggcactcatttgccattactattagaaaccaaagtgtctcaatgtttgttgag
tgtggaaagaaatattttagcacagagactattccagaagttcagacctttgattctaat
agtgtgtttactttaggaagtatgaataataattctatccattttgaaggaatagtatgt
cagttagatattattccttctgcagaagcatctgcagactactgcagatatgtgaaacag
cagtgtcgccaagcagacaaataccaacctgaaacaagcattccttgtacaactctcata
ccaacaaagataccggaacactctcccccgcccaaactatttgctgaaaaagtactgtca
gaggatacatttactgaaggcaaaagcattccaaatatcataaaaaatgattctgaaacc
gtgtataaaagacaagaacaccagatatcaagatctcagttatcttctcttcagtcagga
aatgtctctgctgtggatctcacaaaccatgggattcaggccaaagaaatgatcactgag
gaagatactcagacaaatttcagcctgtcagtgaccactcatcgcatcagtgaggcaaaa
atgaataccaaagagaaatttagctctctcctaaacatgtctgacaatatcacacaacat
gatgatagagtaactggtctgtcactgtttaagaagatgccatctattcttccacaaatt
aaacaagatacaattactaatctcaagaaggctatcacagcaaatctacacactaacgaa
ctcatggaaatgcaaccaattttaaacacaagcttgcatagagtgacaaatgagccatct
gtggataatcaccttgatctaaggaaagaaggtgaattttatcctgatgctacttatccc
atcgaaaatagctatgaaactgagctttatgattattattattatgaggatctaaataca
atgcttgaaatggagtatctgagagggccaaaaggagacactggacctcccggtccacct
ggtccagcaggtatcccaggtccgtcagggaagagaggtccacggggcataccagggcca
catggaaatcctggtttacctggattacctggtccaaagggccccaaaggagatccagga
ttttccccaggtcaacctgttcctggagaaaagggtgatcaaggcctttctggattaatg
ggcccccctggtatgcaaggtgataagggtctcaaaggacatcctggactcccaggactt
ccaggtgaacaaggaattccaggatttgctggtaatattggttcacccggttaccctggc
aggcagggtttagctggaccagaaggtaatccaggtcctaaaggtgcacaaggttttatt
ggctctcctggagaagcgggacaactgggacctgaaggagaacggggcattcctgggatc
cgtggaaagaagggttttaaggggagacagggttttccaggtgactttggagacagaggc
cctgctggtcttgatggcagtcctggacttgtaggtggcactggtcctccggggtttcct
gggcttagaggcagtgttggccctgtgggaccaattggacctgctggaattcctggccca
atgggcctttcagggaataaaggactacctggaatcaaaggtgataagggtgaacaaggc
acagcaggagagctaggagaacccgggtatcctggagacaagggtgctgttggtttacca
ggaccaccagggatgagaggaaagtcagggccttcaggccaaacaggtgacccaggactc
caaggaccatctggccctccaggaccagagggttttccaggagatattgggattcctgga
caaaacggccctgaaggaccaaagggactccttggaaatagaggacctcctggacctcct
ggtctcaaaggaactcagggagaagaaggaccaattggagcctttggggaactggggcca
agaggaaaaccaggtcaaaaggggtatgcaggtgaaccaggaccagaaggcttaaaggga
gaagtaggagatcaaggaaatattggaaaaattggtgaaacaggacctgttggcttacct
ggagaagttgggatgactggaagcattggcgaaaagggagaacgtggaagtccaggccca
ctaggtccgcagggagaaaaaggtgttatgggatatccaggtcctcctggggttccagga
cctatcggtccattgggattacctggtcatgtgggggcaagaggaccacctgggagtcaa
ggtcctaaaggacaaagaggatcaagaggaccagatggtctcttaggggaacaaggtata
caaggtgccaagggtgaaaaaggagatcaaggaaaaagagggcctcatggtcttattggt
aagactggaaaccctggagaaagaggatttcaagggaaaccaggtttacagggattgcct
ggaagtacaggtgacagaggacttccaggagagccaggactgcgaggactgcaaggtgat
gttggacctcctggagaaatgggcatggagggacctccaggcactgagggagagtctggt
ctgcaaggtgaaccaggtgcaaagggagatgttggaactgctggcagtgttggaggaact
ggggaaccaggtttacggggtgaaccaggagctcctggagaagaaggtctccagggaaaa
gatgggttaaagggagtaccaggaggaaggggacttcctggagaggatggagaaaaagga
gagatgggcttaccaggaattataggacccttgggtagatcaggccaaacaggccttccg
ggacctgaaggaattgtgggaattccagggcaaagaggtcgtccaggaaaaaagggtgat
aaaggacaaataggacccacaggagaagttggaagcagaggtcctcctggaaaaattggg
aaaagtggtcctaagggtgccagaggaactagaggtgctgtgggacatttaggattgatg
ggacctgatggagaaccaggaattccagggtacaggggccatcagggccaaccaggaccc
tctggattgccaggacctaaaggagaaaagggctacccaggagaagatagcacagtccta
ggaccacctgggcctcgaggtgaaccaggtccagtgggggaccaaggagagagaggagag
cctggagcagagggatataagggccatgtgggtgtaccaggactaagaggtgccactgga
caacaaggacccccaggcgaaccaggtgaccagggtgaacaaggactaaaaggagagaga
ggatctgaaggtaataaggggaaaaaaggagctcctggtccttctgggaaacctgggatt
cctggacttcaaggcctacttgggccaaaaggcatacaaggataccatggagcagatggc
atttcaggaaaccctggaaaaattgggccaccaggaaaacagggacttcctggcatcaga
ggcggcccaggaagaacaggtcttgctggggctccaggtcctccaggagtaaagggttca
tcaggcttgccaggaagcccaggaattcaaggcccaaagggtgaacaagggctacctggt
caacctggaattcaaggtaaaagaggtcaccgaggagcacaaggtgatcaaggaccatgt
ggagaccctggcctgaaagggcagcctggagaatatggtgttcaaggtttgacaggtttc
caaggattcccaggccctaaaggtcctgaaggggatgctggcattgttgggatatcaggt
cctaaaggtcctattggacacagaggaaacactggtccccttggcagagaaggtataata
ggcccaacaggtagaactggacccagaggtgaaaagggctttagaggtgaaactggtcct
caaggaccaagaggtcaaccagggcctccaggtccacctggagcaccaggcccaagaaag
caaatggatatcaatgctgctattcaagccttgattgaatcaaatactgccctacagatg
gagagctaccagaatactgaagtgactttaattgaccacagtgaagagatattcaaaacc
ctgaactaccttagcaatttattgcacagcatcaagaatcctcttggcacacgagataac
ccagcacgaatctgcaaagatttacttaactgtgaacaaaaagtatcagatggaaaatac
tggattgacccaaatcttggctgtccttcagatgccattgaggttttctgcaatttcagt
gctggtggccagacatgcttacctcctgtttctgtaacaaagttggagtttggagttggg
aaagtccagatgaacttccttcatttactgagttcggaagccacccatatcatcaccatt
cactgtctaaacaccccaaggtggacaagcacacaaacaagtggcccaggattgcctatt
ggtttcaagggatggaatggccagatttttaaagtaaacactctacttgaacctaaagtg
ctttcagatgactgcaagattcaagatggcagctggcataaggcaacatttctttttcac
acccaggaacctaatcaacttccagtgattgaagtacaaaaacttcctcatctcaaaact
gaacgaaagtattacattgacagcagttctgtatgctttctgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   UniGene (1)   
   HGNC (1)   
   Ensembl (1)   
   OC (1)   
   PHAROS (1)   
   VEGA (1)   
Protein sequence (11)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (9)   
DNA sequence (36)   
   RefSeq(nuc) (16)   
   GenBank (10)   
   EMBL (10)   
Protein domain (4)   
   Pfam (4)   
All databases (90)   

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