KEGG   Homo sapiens (human): 5252
Entry
5252              CDS       T01001                                 
Symbol
PHF1, MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Name
(RefSeq) PHD finger protein 1
  KO
K11467  PHD finger protein 1
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01577  Gene silencing by methylation of H3K27 and ubiquitination of H2AK119
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    5252 (PHF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsa03000]
    5252 (PHF1)
   03036 Chromosome and associated proteins [BR:hsa03036]
    5252 (PHF1)
Transcription factors [BR:hsa03000]
 Eukaryotic type
  Zinc finger
   Other zinc fingers
    5252 (PHF1)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     5252 (PHF1)
SSDB
Motif
Pfam: Tudor_2 PHD Mtf2_C ASH2L-like_WH PHD_2 Chromo DUF4537
Other DBs
NCBI-GeneID: 5252
NCBI-ProteinID: NP_077084
OMIM: 602881
HGNC: 8919
Ensembl: ENSG00000112511
UniProt: O43189
Structure
Position
6:33410412..33416439
AA seq 567 aa
MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV
CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV
PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH
LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG
PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE
RSSRLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTSFPSGQGPGGG
VSRPLGKRRRPEPEPLRRRQKGKVEELGPPSAVRNQPEPQEQRERAHLQRALQASVSPPS
PSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLELHIG
FPTDIPKSAPHSMTASSSSVSSPSPGLPRRSAPPSPLCRSLSPGTGGGVRGGVGYLSRGD
PVRVLARRVRPDGSVQYLVEWGGGGIF
NT seq 1704 nt   +upstreamnt  +downstreamnt
atggcgcagcccccccggctgagccgctctggtgcctcctcactttgggacccagcttct
cctgctcccacctctggccccaggcctcggctttgggagggtcaagatgtgctggccaga
tggactgatgggctgctatacttgggtaccatcaaaaaggtggacagtgctagggaggtg
tgtctggtccagtttgaggatgattcgcagtttctggttctatggaaagacattagccct
gctgccctccctggagaggaactcctctgttgtgtctgtcgctctgagactgtggtccct
gggaaccggctggtcagctgtgagaagtgtcgccatgcttatcaccaggactgccatgtt
cccagggctccagcccctggagagggagagggcacatcctgggtatgccgccagtgtgtc
tttgcgatcgccaccaagaggggaggtgccctgaagaagggcccctatgcccgggccatg
ctgggtatgaagctttctctgccatatggactgaaggggctggactgggatgctggacat
ctgagcaaccgacagcagagttactgttactgtggtggccctggggagtggaacctgaaa
atgctgcagtgccggagctgcctgcagtggttccatgaggcctgcacccagtgtctgagc
aagcccctcctctatggggacaggttctatgaatttgaatgctgtgtgtgtcgcgggggc
cctgagaaagtccggagactacagcttcgctgggtggatgtggcccatcttgtcctgtat
cacctcagtgtttgctgtaagaagaaatactttgattttgatcgtgagatcctccccttc
acttctgagaattgggacagtttgctcctgggggagctttcagacacccccaaaggagaa
cgttcttccaggctcctctctgctcttaacagccacaaggaccgtttcatttcagggaga
gagattaagaagaggaaatgtttgtttggtctccatgctcggatgcctccccctgtggag
ccccctactggagatggagcactcaccagcttcccttcagggcagggccctgggggaggg
gtctcacgtcccctggggaagcgccggaggccggagccagagcccctgaggaggaggcag
aaggggaaagtggaggagctggggccaccctcagcagtgcgcaatcagcccgagccccag
gagcagagggagcgggctcatctgcagagggcactgcaggcctcagtgtctccaccatcc
cccagccctaaccagagttaccagggcagcagcggctacaacttccggcccacagatgcc
cgctgcctgcccagcagccccatccggatgtttgcttccttccacccttctgccagcacc
gcagggacctctggggacagtggacccccagacaggtcacccctggaacttcacattggt
ttccccacagacatccctaaaagtgccccccactcgatgactgcctcatcttcctcagtt
tcatccccatccccaggtcttcctagacgctcagcacccccttctcccctgtgccgtagt
ttgtctcctgggactgggggaggagtccgaggtggggttggttacctgtcccgaggggac
cctgtccgggtccttgctcggagagtacggcctgatggctctgtgcagtacctggttgag
tggggaggagggggcatcttctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Network (2)   
   KEGG NETWORK (2)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (47)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (45)   
DNA sequence (74)   
   RefSeq(nuc) (52)   
   GenBank (11)   
   EMBL (11)   
3D Structure (9)   
   PDB (9)   
Protein domain (7)   
   Pfam (7)   
All databases (176)   

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