KEGG   Homo sapiens (human): 55660Help
Entry
55660             CDS       T01001                                 

Gene name
PRPF40A, FBP-11, FBP11, FLAF1, FNBP3, HIP-10, HIP10, HYPA, NY-REN-6, Prp40
Definition
(RefSeq) pre-mRNA processing factor 40 homolog A
  KO
K12821  pre-mRNA-processing factor 40
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    55660 (PRPF40A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    55660 (PRPF40A)
Spliceosome [BR:hsa03041]
 Complex A
  U1 snRNP components
   U1 related factors
    55660 (PRPF40A)
 Complex B
    55660 (PRPF40A)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: FF WW MCR_alpha
Motif
Other DBs
NCBI-GeneID: 55660
NCBI-ProteinID: NP_060362
OMIM: 612941
HGNC: 16463
Ensembl: ENSG00000196504
Vega: OTTHUMG00000154031
Pharos: O75400(Tbio)
UniProt: O75400
Structure
PDB: 

Position
2q23.3
AA seq 930 aa AA seqDB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQ
MMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWT
EHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKES
RWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTT
MSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEVTSIVATVVD
NENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKT
YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ
TEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEI
YEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDE
ELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQL
HSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKG
FVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKE
SAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHH
HSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYK
KSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDS
GNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq 2793 nt NT seq  +upstreamnt  +downstreamnt
atgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagctgagcgtggaggcctcatgatggggcaccctggcatgcattatgccccaatggga
atgcaccctatgggtcagagagcgaatatgcctcctgtacctcatggaatgatgccgcag
atgatgccccctatgggagggccaccaatgggacaaatgcctggaatgatgtcgtcagta
atgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgccttaccgcca
ggagtaaatagtatggatgtagcagcaggtacagcatctggtgcaaaatcaatgtggact
gaacataaatcacctgatggaaggacttactactacaacactgaaaccaaacagtctacc
tgggagaaaccagatgatcttaaaacacctgctgagcaactcttatctaaatgcccctgg
aaggaatacaaatcagattctggaaagccttactattataattctcaaacaaaagaatct
cgctgggccaaacctaaagaacttgaggatcttgaaggataccagaataccattgttgct
ggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagcagtaag
caagaagagtgcaccacaacatcaacagccccagtccctacaacagaaattccgaccaca
atgagcaccatggctgctgccgaagcagcagctgctgttgttgcagcagcagcagcggca
gcagcagcagcagctgcagccaatgctaatgcttccacttctgcttctaatactgtcagt
ggaactgttccagttgttcctgagcctgaagttacttccattgttgctactgttgtagat
aatgagaatacagtaactatttcaactgaggaacaagcacaacttactagtacccctgct
attcaggatcaaagtgtggaagtatccagtaatactggagaagaaacatctaagcaagaa
actgtagctgattttactcccaaaaaagaagaggaggagagccaaccagcaaagaaaaca
tacacttggaatacaaaggaagaggcaaagcaagcttttaaagaattattgaaagaaaag
cgggtaccatcgaatgcttcatgggagcaggctatgaaaatgattattaatgatccacga
tacagtgctttggcaaagttaagtgaaaaaaagcaagcctttaatgcctataaagtccag
acagaaaaagaagaaaaagaagaagcaagatcaaagtacaaagaggctaaggaatccttt
cagcgttttcttgaaaatcatgagaaaatgacttctacaaccagatacaaaaaagcagag
caaatgtttggagagatggaagtttggaatgcaatatcagaacgtgatcgtcttgaaatc
tatgaagatgttttgttctttctttcaaaaaaagaaaaggaacaagcaaagcagttgcga
aagagaaattgggaagccttaaaaaacatacttgacaacatggctaatgtaacatactct
accacttggtctgaagcccagcagtatctgatggataatccaacttttgcagaagatgag
gagttacaaaatatggacaaagaagatgcattaatttgctttgaagaacacattcgggct
ttagaaaaggaggaagaagaagaaaaacagaagagtttgctgagagaaaggagacgacag
cgaaaaaatagggaatctttccagatatttttagatgaattacatgaacatggacaactg
cattctatgtcatcttggatggaattgtatccaactattagttctgatattagattcact
aatatgcttggtcagcctggatcaactgcacttgatcttttcaagttttatgttgaggat
cttaaagcacgttatcatgacgagaagaagataataaaagacattctaaaggataaagga
tttgtagttgaagtaaacactacttttgaagattttgtggcgataatcagttcaactaaa
agatcaactacattagatgctggaaatatcaaattggctttcaatagtttactagaaaag
gcagaagcccgtgaacgtgaaagagaaaaagaagaggctcggaagatgaaacgaaaagaa
tctgcatttaagagtatgttaaaacaagctgctcctccgatagaattggatgctgtctgg
gaagatatccgtgagagatttgtaaaagagccagcatttgaggacataactctagaatct
gaaagaaaacgaatatttaaagattttatgcatgtgcttgagcatgaatgtcagcatcat
cattcaaagaacaagaaacattctaagaaatctaaaaaacatcataggaaacgttcccgc
tctcgatcggggtcagattcagatgatgatgatagccattcaaagaaaaaaagacagcga
tcagagtctcgttctgcttcagaacattcttctagtgcagagtctgagagaagttataaa
aagtcaaaaaagcataagaagaaaagtaagaagaggagacataaatctgactctccagaa
tccgatgctgagcgagagaaggataaaaaagaaaaagatcgggaaagtgaaaaagacaga
actagacaaagatcagaatcaaaacacaaatcgcctaagaaaaagactggaaaggattct
ggtaattgggatacttctggcagcgaactgagtgaaggggaattggaaaagcgcagaaga
acccttttggagcaactggatgatgatcaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (84)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   UniGene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (6)   
   OC (1)   
   PHAROS (1)   
   PROTHERM (48)   
   VEGA (1)   
Protein sequence (31)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (29)   
DNA sequence (65)   
   RefSeq(nuc) (29)   
   GenBank (18)   
   EMBL (18)   
Protein domain (3)   
   Pfam (3)   
All databases (188)   

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