KEGG   Homo sapiens (human): 56979
Entry
56979             CDS       T01001                                 
Symbol
PRDM9, KMT8B, MEISETZ, MSBP3, PFM6, ZNF899
Name
(RefSeq) PR/SET domain 9
  KO
K20796  [histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:2.1.1.354]
Organism
hsa  Homo sapiens (human)
Pathway
hsa00310  Lysine degradation
hsa01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    56979 (PRDM9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsa03000]
    56979 (PRDM9)
   03036 Chromosome and associated proteins [BR:hsa03036]
    56979 (PRDM9)
Enzymes [BR:hsa01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.354  [histone H3]-lysine4 N-trimethyltransferase
     56979 (PRDM9)
Transcription factors [BR:hsa03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    56979 (PRDM9)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Meiosis-specific proteins
   DSB formation-related proteins
    56979 (PRDM9)
  Histone modification proteins
   HMTs (histone methyltransferases)
    HKMTs (histone lysine methyltransferases)
     56979 (PRDM9)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_15 PRDM2_PR zf-C2H2_4 zf-C2H2_jaz SSXRD zf-C2H2_5 zf-C2H2_6 SET KRAB zf-C2H2_16 Zn_ribbon_8 zf-met Zn_ribbon_PRDM4 Phage_F
Other DBs
NCBI-GeneID: 56979
NCBI-ProteinID: NP_001297143
OMIM: 609760
HGNC: 13994
Ensembl: ENSG00000164256
UniProt: Q9NQV7 A0AAG2UW24
Structure
Position
5:23507155..23528093
AA seq 894 aa
MSPEKSQEESPEEDTERTERKPMVKDAFKDISIYFTKEEWAEMGDWEKTRYRNVKRNYNA
LITIGLRATRPAFMCHRRQAIKLQVDDTEDSDEEWTPRQQVKPPWMALRVEQRKHQKGMP
KASFSNESSLKELSRTANLLNASGSEQAQKPVSPSGEASTSGQHSRLKLELRKKETERKM
YSLRERKGHAYKEVSEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSAL
SLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANNGYSWLITKGRN
CYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVWYGDE
YGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQNFPGPS
ARKLLQPENPCPGDQNQEQQYPDPHSRNDKTKGQEIKERSKLLNKRTWQREISRAFSSPP
KGQMGSCRVGKRIMEEESRTGQKVNPGNTGKLFVGVGISRIAKVKYGECGQGFSVKSDVI
THQRTHTGEKLYVCRECGRGFSWKSHLLIHQRIHTGEKPYVCRECGRGFSWQSVLLTHQR
THTGEKPYVCRECGRGFSRQSVLLTHQRRHTGEKPYVCRECGRGFSRQSVLLTHQRRHTG
EKPYVCRECGRGFSWQSVLLSHQRTHTGEKPYVCRECGRGFSWQSVLLTHQRTHTGEKPY
VCRECGRGFSNKSHLLRHQRTHTGEKPYVCRECGRGFRDKSHLLRHQRTHTGEKPYVCRE
CGRGFRDKSNLLSHQRTHTGEKPYVCRECGRGFSNKSHLLRHQRTHTGEKPYVCRECGRG
FRNKSHLLRHQRTHTGEKPYVCRECGRGFSDRSSLCYHQRTHTGEKPYVCREDE
NT seq 2685 nt   +upstreamnt  +downstreamnt
atgagccctgaaaagtcccaagaggagagcccagaagaagacacagagagaacagagcgg
aagcccatggtcaaagatgccttcaaagacatttccatatacttcaccaaggaagaatgg
gcagagatgggagactgggagaaaactcgctataggaatgtgaaaaggaactataatgca
ctgattactataggtctcagagccactcgaccagctttcatgtgtcaccgaaggcaggcc
atcaaactccaggtggatgacacagaagattctgatgaagaatggacccctaggcagcaa
gtcaaacctccttggatggccttaagagtggaacagcgtaaacaccagaagggaatgccc
aaggcgtcattcagtaatgaatctagtttgaaagaattgtcaagaacagcaaatttactg
aatgcaagtggctcagagcaggctcagaaaccagtgtccccttctggagaagcaagtacc
tctggacagcactcaagactaaaactggaactcaggaagaaggagactgaaagaaagatg
tatagcctgcgagaaagaaagggtcatgcatacaaagaggtcagcgagccgcaggatgat
gattacctctattgtgagatgtgtcagaacttcttcattgacagctgtgctgcccatggg
ccccctacatttgtaaaggacagtgcagtggacaaggggcaccccaaccgttcagccctc
agtctgcccccagggctgagaattgggccatcaggcatccctcaggctgggcttggagta
tggaatgaggcatctgatctgccgctgggtctgcactttggcccttatgagggccgaatt
acagaagacgaagaggcagccaacaatggatactcctggctgatcaccaaggggagaaac
tgctatgagtatgtggatggaaaagataaatcctgggccaactggatgaggtatgtgaac
tgtgcccgggatgatgaagagcagaacctggtggccttccagtaccacaggcagatcttc
tatagaacctgccgagtcattaggccaggctgtgaactgctggtctggtatggggatgaa
tacggccaggaactgggcatcaagtggggcagcaagtggaagaaagagctcatggcaggg
agagaaccaaagccagagatccatccatgtccctcatgctgtctggccttttcaagtcag
aaatttctcagtcaacatgtagaacgcaatcactcctctcagaacttcccaggaccatct
gcaagaaaactcctccaaccagagaatccctgcccaggggatcagaatcaggagcagcaa
tatccagatccacacagccgtaatgacaaaaccaaaggtcaagagatcaaagaaaggtcc
aaactcttgaataaaaggacatggcagagggagatttcaagggccttttctagcccaccc
aaaggacaaatggggagctgtagagtgggaaaaagaataatggaagaagagtccagaaca
ggccagaaagtgaatccagggaacacaggcaaattatttgtgggggtaggaatctcaaga
attgcaaaagtcaagtatggagagtgtggacaaggtttcagtgttaaatcagatgttatt
acacaccaaaggacacatacaggggagaagctctacgtctgcagggagtgtgggcggggc
tttagctggaagtcacacctcctcattcaccagaggatacacacaggggagaagccctat
gtctgcagggagtgtgggcggggctttagctggcagtcagtcctcctcactcaccagagg
acacacacaggggagaagccctatgtctgcagggagtgtgggcggggctttagccggcag
tcagtcctcctcactcaccagaggagacacacaggggagaagccctatgtctgcagggag
tgtgggcggggctttagccggcagtcagtcctcctcactcaccagaggagacacacaggg
gagaagccctatgtctgcagggagtgtgggcggggctttagctggcagtcagtcctcctc
agtcaccagaggacacacacaggggagaagccctatgtctgcagggagtgtgggcggggc
tttagctggcagtcagtcctcctcactcaccagaggacacacacaggggagaagccctat
gtctgcagggagtgtgggcggggctttagcaataagtcacacctcctcagacaccagagg
acacacacaggggagaagccctatgtctgcagggagtgtgggcggggctttcgcgataag
tcacacctcctcagacaccagaggacacacacaggggagaagccctatgtctgcagggag
tgtgggcggggctttagagataagtcaaacctcctcagtcaccagaggacacacacaggg
gagaagccctatgtctgcagggagtgtgggcggggctttagcaataagtcacacctcctc
agacaccagaggacacacacaggggagaagccctatgtctgcagggagtgtgggcggggc
tttcgcaataagtcacacctcctcagacaccagaggacacacacaggggagaagccctac
gtctgcagggagtgtgggcggggctttagcgataggtcaagcctctgctatcaccagagg
acacacacaggggagaagccctacgtctgcagggaggatgagtaa

  All links  
Disease (1)   
   OMIM (1)   
Gene (26)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (39)   
   RefSeq(nuc) (3)   
   GenBank (18)   
   EMBL (18)   
3D Structure (5)   
   PDB (5)   
Protein domain (16)   
   Pfam (16)   
All databases (93)   

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