KEGG   Homo sapiens (human): 5719
Entry
5719              CDS       T01001                                 

Gene name
PSMD13, HSPC027, Rpn9, S11, p40.5
Definition
(RefSeq) proteasome 26S subunit, non-ATPase 13
  KO
K03039  26S proteasome regulatory subunit N9
Organism
hsa  Homo sapiens (human)
Pathway
hsa03050  Proteasome
hsa05010  Alzheimer disease
hsa05012  Parkinson disease
hsa05014  Amyotrophic lateral sclerosis
hsa05016  Huntington disease
hsa05017  Spinocerebellar ataxia
hsa05020  Prion disease
hsa05022  Pathways of neurodegeneration - multiple diseases
hsa05169  Epstein-Barr virus infection
Network
nt06420  Ubiquitin-proteasome system
nt06460  Alzheimer disease
nt06461  Huntington disease
nt06463  Parkinson disease
nt06464  Amyotrophic lateral sclerosis
nt06465  Prion disease
  Element
N01029  26S proteasome-mediated protein degradation
N01030  Mutation-caused aberrant SNCA to 26S proteasome-mediated protein degradation
N01060  Mutation-caused aberrant Abeta to 26S proteasome-mediated protein degradation
N01061  Mutation-caused aberrant Htt to 26S proteasome-mediated protein degradation
N01144  Mutation-caused aberrant SOD1 to 26S proteasome-mediated protein degradation
N01145  Mutation-inactivated VCP to 26S proteasome-mediated protein degradation
N01146  Mutation-inactivated UBQLN2 to 26S proteasome-mediated protein degradation
N01197  Scrapie conformation PrPSc to 26S proteasome-mediated protein degradation
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    5719 (PSMD13)
 09160 Human Diseases
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    5719 (PSMD13)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    5719 (PSMD13)
   05012 Parkinson disease
    5719 (PSMD13)
   05014 Amyotrophic lateral sclerosis
    5719 (PSMD13)
   05016 Huntington disease
    5719 (PSMD13)
   05017 Spinocerebellar ataxia
    5719 (PSMD13)
   05020 Prion disease
    5719 (PSMD13)
   05022 Pathways of neurodegeneration - multiple diseases
    5719 (PSMD13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:hsa03051]
    5719 (PSMD13)
Proteasome [BR:hsa03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     5719 (PSMD13)
SSDB
Motif
Pfam: PCI Rpn9_C
Other DBs
NCBI-GeneID: 5719
NCBI-ProteinID: NP_002808
OMIM: 603481
HGNC: 9558
Ensembl: ENSG00000185627
Vega: OTTHUMG00000119072
Pharos: Q9UNM6(Tbio)
UniProt: Q9UNM6
Structure
PDB: 

Position
11p15.5
AA seq 376 aa
MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF
NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV
KSMEMLVEHQAHDILT
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgaaggacgtaccgggcttcctacagcagagccagaactccgggcccgggcagcccgct
gtgtggcaccgtctggaggagctctacacgaagaagttgtggcatcagctgacacttcag
gtgcttgattttgtgcaggatccgtgctttgcccaaggagatggtctcattaagctttat
gaaaactttatcagtgaatttgaacacagggtgaaccctttgtccctcgtggaaatcatt
cttcatgtagttagacagatgactgatcctaatgtggctcttacttttctggaaaagact
cgtgagaaggtgaaaagtagtgatgaggcagtgatcctgtgtaaaacagcaattggagct
ctaaaattaaacatcggggacctacaggttacaaaggaaacaattgaagatgttgaagaa
atgctcaacaaccttcctggtgtgacatcggttcacagtcgtttctatgatctctccagt
aaatactatcaaacaatcggaaaccacgcgtcctactacaaagatgctctgcggtttttg
ggctgtgttgacatcaaggatctaccagtgtctgagcagcaggagagagccttcacgctg
gggctagcaggacttctcggcgagggagtttttaactttggagaactcctcatgcaccct
gtgctggagtccctgaggaatactgaccggcagtggctgattgacaccctctatgccttc
aacagtggcaacgtagagcggttccagactctgaagactgcctggggccagcagcctgat
ttagcagctaatgaagcccagcttctgaggaaaattcagttgttgtgcctcatggagatg
actttcacacgacctgccaatcacagacaactcacttttgaagaaattgccaaaagtgct
aaaatcacagtgaatgaggtggagcttctggtgatgaaggccctttcggtggggctggtg
aaaggcagtatagacgaggtggacaaacgagtccacatgacctgggtgcagccccgagtg
ttggatttgcaacagatcaagggaatgaaggaccgcctggagttctggtgcacggatgtg
aagagcatggagatgctggtggagcaccaggcccatgacatcctcacctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (9)   
   KEGG PATHWAY (9)   
Network (8)   
   KEGG NETWORK (8)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (9)   
   OC (1)   
   PHAROS (1)   
   VEGA (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (39)   
   RefSeq(nuc) (3)   
   GenBank (18)   
   EMBL (18)   
Protein domain (2)   
   Pfam (2)   
All databases (88)   

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