KEGG   Homo sapiens (human): 6382
Entry
6382              CDS       T01001                                 
Symbol
SDC1, CD138, SDC, SYND1, syndecan
Name
(RefSeq) syndecan 1
  KO
K06257  syndecan 1
Organism
hsa  Homo sapiens (human)
Pathway
hsa04512  ECM-receptor interaction
hsa04514  Cell adhesion molecule (CAM) interaction
hsa04820  Cytoskeleton in muscle cells
hsa05144  Malaria
hsa05205  Proteoglycans in cancer
hsa05418  Fluid shear stress and atherosclerosis
Network
nt06539  Cytoskeleton in muscle cells
nt06546  IgSF CAM signaling
  Element
N01814  Extracellular matrix - Basal lamina
N01946  PTPRF interactions
N01947  PTPRS interactions
N01948  PTPRD interactions
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    6382 (SDC1)
   04514 Cell adhesion molecule (CAM) interaction
    6382 (SDC1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    6382 (SDC1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    6382 (SDC1)
  09174 Infectious disease: parasitic
   05144 Malaria
    6382 (SDC1)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    6382 (SDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    6382 (SDC1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:hsa04090]
    6382 (SDC1)
   00535 Proteoglycans [BR:hsa00535]
    6382 (SDC1)
Membrane trafficking [BR:hsa04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    6382 (SDC1)
CD molecules [BR:hsa04090]
 Proteins
  6382 (SDC1)
Proteoglycans [BR:hsa00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   6382 (SDC1)
SSDB
Motif
Pfam: Syndecan Romo1
Other DBs
NCBI-GeneID: 6382
NCBI-ProteinID: NP_001006947
OMIM: 186355
HGNC: 10658
Ensembl: ENSG00000115884
UniProt: P18827
Structure
Position
2:complement(20200797..20225475)
AA seq 310 aa
MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
ATPRPRETTQLPTTHLASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
KPTKQEEFYA
NT seq 933 nt   +upstreamnt  +downstreamnt
atgaggcgcgcggcgctctggctctggctgtgcgcgctggcgctgagcctgcagccggcc
ctgccgcaaattgtggctactaatttgccccctgaagatcaagatggctctggggatgac
tctgacaacttctccggctcaggtgcaggtgctttgcaagatatcaccttgtcacagcag
accccctccacttggaaggacacgcagctcctgacggctattcccacgtctccagaaccc
accggcctggaggctacagctgcctccacctccaccctgccggctggagaggggcccaag
gagggagaggctgtagtcctgccagaagtggagcctggcctcaccgcccgggagcaggag
gccaccccccgacccagggagaccacacagctcccgaccactcatctggcctcaacgacc
acagccaccacggcccaggagcccgccacctcccacccccacagggacatgcagcctggc
caccatgagacctcaacccctgcaggacccagccaagctgaccttcacactccccacaca
gaggatggaggtccttctgccaccgagagggctgctgaggatggagcctccagtcagctc
ccagcagcagagggctctggggagcaggacttcacctttgaaacctcgggggagaatacg
gctgtagtggccgtggagcctgaccgccggaaccagtccccagtggatcagggggccacg
ggggcctcacagggcctcctggacaggaaagaggtgctgggaggggtcattgccggaggc
ctcgtggggctcatctttgctgtgtgcctggtgggtttcatgctgtaccgcatgaagaag
aaggacgaaggcagctactccttggaggagccgaaacaagccaacggcggggcctaccag
aagcccaccaaacaggaggaattctatgcctga

  All links  
Disease (1)   
   OMIM (1)   
Gene (19)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (9)   
   OC (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (32)   
   RefSeq(nuc) (8)   
   GenBank (12)   
   EMBL (12)   
3D Structure (3)   
   PDB (3)   
Protein domain (2)   
   Pfam (2)   
All databases (67)   

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