KEGG   Homo sapiens (human): 6396
Entry
6396              CDS       T01001                                 
Symbol
SEC13, D3S1231E, SEC13L1, SEC13R, npp-20
Name
(RefSeq) SEC13 homolog, nuclear pore and COPII component
  KO
K14004  protein transport protein SEC13
Organism
hsa  Homo sapiens (human)
Pathway
hsa03013  Nucleocytoplasmic transport
hsa04141  Protein processing in endoplasmic reticulum
hsa04150  mTOR signaling pathway
hsa05014  Amyotrophic lateral sclerosis
Network
nt06180  Pathogenic Escherichia coli
  Element
N01289  COPII vesicle formation
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    6396 (SEC13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    6396 (SEC13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    6396 (SEC13)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    6396 (SEC13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    6396 (SEC13)
   04131 Membrane trafficking [BR:hsa04131]
    6396 (SEC13)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     6396 (SEC13)
Membrane trafficking [BR:hsa04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    6396 (SEC13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    6396 (SEC13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    6396 (SEC13)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_RIG_2nd ANAPC4_WD40 EIF3I Beta-prop_NOL10_N WD40_Gbeta Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st NBCH_WD40
Other DBs
NCBI-GeneID: 6396
NCBI-ProteinID: NP_899195
OMIM: 600152
HGNC: 10697
Ensembl: ENSG00000157020
UniProt: P55735
Structure
Position
3:complement(10300931..10321112)
AA seq 322 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPV
WQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLIL
ACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK
RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV
FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI
SDVNKGQGSVSASVTEGQQNEQ
NT seq 969 nt   +upstreamnt  +downstreamnt
atggtgtcagtaattaacactgtggatacctcccatgaggacatgattcacgacgcccag
atggactactatggcacccgcctggcaacctgctcatcagacaggtccgtcaaaatcttt
gatgtgcgcaatggagggcagatccttatcgccgacctcaggggtcatgagggtcctgtg
tggcaagtggcctgggctcaccccatgtacggcaacatcctggcatcgtgctcctatgac
cggaaagtcattatctggagagaggaaaacggcacctgggagaagagccacgagcatgcg
ggacacgactcctcagtgaactcggtgtgctgggccccccatgactacggcctgatcctg
gcctgtgggagctcggatggggccatctccctgctgacttacaccggggaaggccaatgg
gaagtaaagaagatcaacaacgctcacaccattggctgcaatgccgtcagctgggcccct
gctgttgtacctggaagcctcatagaccacccatcggggcagaaacccaattacatcaag
aggtttgcatcaggtggctgtgacaacctcatcaagctgtggaaggaggaggaggacggc
cagtggaaggaggagcagaagctagaagcgcacagtgactgggttcgagatgtggcctgg
gccccctccatcggcctgcccaccagcaccatcgccagctgctcccaggatggtcgtgtg
ttcatttggacctgtgatgatgcctcaagcaatacgtggtcccctaaattgttgcacaag
ttcaacgatgtggtgtggcatgtgagctggtccatcacagccaacatcctggctgtctct
ggtggagacaataaggtgaccctgtggaaggagtcagttgatgggcagtgggtgtgcatc
agtgatgtcaacaagggccagggctccgtatcagcatcagtgacagagggccagcagaac
gagcagtga

  All links  
Disease (1)   
   OMIM (1)   
Gene (31)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (11)   
   OC (1)   
Protein sequence (35)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (33)   
DNA sequence (65)   
   RefSeq(nuc) (33)   
   GenBank (16)   
   EMBL (16)   
3D Structure (16)   
   PDB (16)   
Protein domain (25)   
   Pfam (25)   
All databases (173)   

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