KEGG   Homo sapiens (human): 6657Help
Entry
6657              CDS       T01001                                 

Gene name
SOX2, ANOP3, MCOPS3
Definition
(RefSeq) SRY-box 2
  KO
K16796  transcription factor SOX2 (SOX group B)
Organism
hsa  Homo sapiens (human)
Pathway
hsa04390  Hippo signaling pathway
hsa04550  Signaling pathways regulating pluripotency of stem cells
Disease
H00544  Septo-optic dysplasia
H02170  Microphthalmia, syndromic
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04390 Hippo signaling pathway
    6657 (SOX2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04550 Signaling pathways regulating pluripotency of stem cells
    6657 (SOX2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsa03000]
    6657 (SOX2)
Transcription factors [BR:hsa03000]
 Eukaryotic Type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    6657 (SOX2)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: SOXp HMG_box HMG_box_2
Motif
Other DBs
NCBI-GeneID: 6657
NCBI-ProteinID: NP_003097
OMIM: 184429
HGNC: 11195
Ensembl: ENSG00000181449
Vega: OTTHUMG00000158222
Pharos: P48431(Tbio)
UniProt: P48431 A0A0U3FYV6
Structure
PDB: 

Position
3q26.33
AA seq 317 aa AA seqDB search
MYNMMETELKPPGPQQTSGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMA
QENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLM
KKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGY
PQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALGSM
GSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHYQS
GPVPGTAINGTLPLSHM
NT seq 954 nt NT seq  +upstreamnt  +downstreamnt
atgtacaacatgatggagacggagctgaagccgccgggcccgcagcaaacttcggggggc
ggcggcggcaactccaccgcggcggcggccggcggcaaccagaaaaacagcccggaccgc
gtcaagcggcccatgaatgccttcatggtgtggtcccgcgggcagcggcgcaagatggcc
caggagaaccccaagatgcacaactcggagatcagcaagcgcctgggcgccgagtggaaa
cttttgtcggagacggagaagcggccgttcatcgacgaggctaagcggctgcgagcgctg
cacatgaaggagcacccggattataaataccggccccggcggaaaaccaagacgctcatg
aagaaggataagtacacgctgcccggcgggctgctggcccccggcggcaatagcatggcg
agcggggtcggggtgggcgccggcctgggcgcgggcgtgaaccagcgcatggacagttac
gcgcacatgaacggctggagcaacggcagctacagcatgatgcaggaccagctgggctac
ccgcagcacccgggcctcaatgcgcacggcgcagcgcagatgcagcccatgcaccgctac
gacgtgagcgccctgcagtacaactccatgaccagctcgcagacctacatgaacggctcg
cccacctacagcatgtcctactcgcagcagggcacccctggcatggctcttggctccatg
ggttcggtggtcaagtccgaggccagctccagcccccctgtggttacctcttcctcccac
tccagggcgccctgccaggccggggacctccgggacatgatcagcatgtatctccccggc
gccgaggtgccggaacccgccgcccccagcagacttcacatgtcccagcactaccagagc
ggcccggtgcccggcacggccattaacggcacactgcccctctcacacatgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Disease (4)   
   KEGG DISEASE (2)   
   OMIM (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   UniGene (2)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (14)   
   OC (1)   
   PHAROS (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (25)   
   RefSeq(nuc) (1)   
   GenBank (12)   
   EMBL (12)   
Protein domain (3)   
   Pfam (3)   
All databases (71)   

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