KEGG   Homo sapiens (human): 6760
Entry
6760              CDS       T01001                                 
Symbol
SS18, SMARCL1, SSXT, SYT
Name
(RefSeq) SS18 subunit of BAF chromatin remodeling complex
  KO
K15623  protein SSXT
Organism
hsa  Homo sapiens (human)
Pathway
hsa03082  ATP-dependent chromatin remodeling
hsa05202  Transcriptional misregulation in cancer
Network
nt06240  Transcription (cancer)
  Element
N00142  SYT-SSX fusion to transcriptional repression
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    6760 (SS18)
 09160 Human Diseases
  09161 Cancer: overview
   05202 Transcriptional misregulation in cancer
    6760 (SS18)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsa03036]
    6760 (SS18)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    6760 (SS18)
   GBAF(ncBAF) complex
    6760 (SS18)
SSDB
Motif
Pfam: SSXT
Other DBs
NCBI-GeneID: 6760
NCBI-ProteinID: NP_001007560
OMIM: 600192
HGNC: 11340
Ensembl: ENSG00000141380
UniProt: Q15532
Structure
Position
18:complement(26016253..26091219)
AA seq 418 aa
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgtctgtggctttcgcggccccgaggcagcgaggcaagggggagatcactcccgctgcg
attcagaagatgttggatgacaataaccatcttattcagtgtataatggactctcagaat
aaaggaaagacctcagagtgttctcagtatcagcagatgttgcacacaaacttggtatac
cttgctacaatagcagattctaatcaaaatatgcagtctcttttaccagcaccacccaca
cagaatatgcctatgggtcctggagggatgaatcagagcggccctcccccacctccacgc
tctcacaacatgccttcagatggaatggtaggtgggggtcctcctgcaccgcacatgcag
aaccagatgaacggccagatgcctgggcctaaccatatgcctatgcagggacctggaccc
aatcaactcaatatgacaaacagttccatgaatatgccttcaagtagccatggatccatg
ggaggttacaaccattctgtgccatcatcacagagcatgccagtacagaatcagatgaca
atgagtcagggacaaccaatgggaaactatggtcccagaccaaatatgagtatgcagcca
aaccaaggtccaatgatgcatcagcagcctccttctcagcaatacaatatgccacaggga
ggcggacagcattaccaaggacagcagccacctatgggaatgatgggtcaagttaaccaa
ggcaatcatatgatgggtcagagacagattcctccctatagacctcctcaacagggccca
ccacagcagtactcaggccaggaagactattacggggaccaatacagtcatggtggacaa
ggtcctccagaaggcatgaaccagcaatattaccctgatggtcataatgattacggttat
cagcaaccgtcgtatcctgaacaaggctacgataggccttatgaggattcctcacaacat
tactacgaaggaggaaattcacagtatggccaacagcaagatgcataccagggaccacct
ccacaacagggatatccaccccagcagcagcagtacccagggcagcaaggttacccagga
cagcagcagggctacggtccttcacagggtggtccaggtcctcagtatcctaactaccca
cagggacaaggtcagcagtatggaggatatagaccaacacagcctggaccaccacagcca
ccccagcagaggccttatggatatgaccagggacagtatggaaattaccagcagtga

  All links  
Disease (1)   
   OMIM (1)   
Gene (12)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (27)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (25)   
DNA sequence (67)   
   RefSeq(nuc) (25)   
   GenBank (21)   
   EMBL (21)   
3D Structure (1)   
   PDB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (109)   

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