KEGG   Homo sapiens (human): 6829
Entry
6829              CDS       T01001                                 
Symbol
SUPT5H, SPT5, SPT5H, Tat-CT1
Name
(RefSeq) transcription elongation factor SPT5 isoform a
  KO
K15172  transcription elongation factor SPT5
Organism
hsa  Homo sapiens (human)
Pathway
hsa03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    6829 (SUPT5H)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsa03021]
    6829 (SUPT5H)
   03019 Messenger RNA biogenesis [BR:hsa03019]
    6829 (SUPT5H)
Transcription machinery [BR:hsa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     6829 (SUPT5H)
  RNA polymerase I system
     6829 (SUPT5H)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     6829 (SUPT5H)
SSDB
Motif
Pfam: KOW1_SPT5 KOW KOW4_SPT5 KOW2_Spt5 KOW5_SPT5 KOW7_SPT5 Spt5-NGN KOW6_SPT5 KOWx_SPT5 Spt5_N GPKOW_C DUF3912 Ribonuc_P_40
Other DBs
NCBI-GeneID: 6829
NCBI-ProteinID: NP_001104490
OMIM: 602102
HGNC: 11469
Ensembl: ENSP00000404029.4
UniProt: O00267
Structure
Position
19:39445582..39476670
AA seq 1087 aa
MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
LGKLLEA
NT seq 3264 nt   +upstreamnt  +downstreamnt
atgtcggacagcgaggacagcaacttttccgaggaggaggacagcgagcgcagcagtgac
ggcgaggaggccgaggtagacgaagagcggcggagtgcagcgggcagtgagaaagaagaa
gagcctgaggacgaagaggaggaggaagaggaggaggaatacgatgaggaagaggaggaa
gaagatgatgaccgaccccccaagaaaccccgccatggaggcttcattctggacgaggct
gatgttgacgatgagtatgaggacgaggaccagtgggaggatggagcagaggacattcta
gagaaagaagagattgaagcctccaatatcgataatgttgtcctggatgaagatcgttct
ggggctcgccgcctgcaaaacctctggagggaccagcgagaagaagaactgggcgagtat
tacatgaagaaatacgccaagtcatctgtgggagagacggtgtatggaggatctgatgag
ctctcagacgacatcacccagcagcagctgctcccaggagtcaaggatcccaatctgtgg
actgtcaaatgtaagattggggaggaacgggccacggccatttccttgatgcgcaagttc
attgcctaccagttcacagacacgcccctgcagatcaagtcagtagtggcaccagagcat
gtgaagggctacatctacgtggaggcctacaagcagacccacgtgaagcaggccattgag
ggggtgggcaacctgcggcttggctactggaaccagcagatggtgcccatcaaggagatg
acagacgtgctcaaagtggtgaaggaggtggccaacctgaaaccaaagtcctgggtccgc
ctcaagcggggcatctacaaggatgacattgctcaggtggactacgtggagcccagccag
aacaccatctccctgaagatgatcccacgcatcgactacgatcgcatcaaggcccgcatg
agcttgaaagactggtttgccaaaaggaagaagtttaagcggcctccacagaggctgttt
gatgctgagaagatcaggtccctggggggtgatgttgcctctgatggtgacttcctcatc
tttgaggggaaccgttacagccggaagggctttctgttcaagagcttcgccatgtctgct
gtgatcacggagggtgtgaagccaacactctctgagctggaaaagtttgaggaccagcca
gagggcattgacctggaggtggtgactgagagcacagggaaggagcgggagcacaacttc
caacctggggacaacgtggaggtctgtgagggtgagctcatcaacctgcagggcaagatc
ctcagcgtggatggcaacaagatcaccatcatgcccaagcatgaggacctcaaggacatg
ttggagttcccagcccaggaacttagaaaatacttcaagatgggggaccacgtgaaggtg
attgctggccgattcgagggcgacacaggcctcattgtgcgggtggaggagaatttcgtt
atcctgttctctgacctcaccatgcatgagctgaaggtgctcccccgggacctgcagctc
tgctcagagacagcatcaggtgtggatgttgggggccagcatgaatggggcgagctggtg
cagctggatccccagactgtgggtgtcatcgtgcgactagaacgggagaccttccaggtg
ctgaacatgtacgggaaggtggtgactgtcagacatcaggctgtgacccggaagaaggac
aaccgctttgctgtggccttggactcagagcagaacaacatccatgtgaaagacatcgtt
aaggtcattgatggcccccactcaggccgagaaggggagattcgccatctcttccgaagc
ttcgccttcctacattgcaagaaactggtggagaacgggggcatgtttgtctgcaagacc
cgccacctggtgctggctgggggctcaaagccccgtgatgtgaccaacttcaccgtgggt
ggctttgcgcctatgagtccccggatcagcagccccatgcaccccagtgctggaggtcag
cgtggcggctttggtagcccaggtggcggcagtggtggcatgagcaggggccggggccgg
agggacaacgaactcatcggccagaccgtgcgcatctcccaggggccctacaaaggctac
atcggtgtggtgaaagatgccacagagtccacggcccgtgtggagctgcactccacctgc
cagaccatctctgtggaccgtcagcggctcaccacggtgggctcacggcgcccgggcggc
atgacctcgacctatgggaggacgcccatgtatggctcccagacgcccatgtatggctct
ggctcccgaacacccatgtacggctcacagacacccctccaggatggtagccgcacccca
cactacggctcacagacgcccctgcatgatggcagccgcactcctgcccagagtggggcc
tgggaccccaacaaccccaacacgccgtcacgggctgaggaagaatatgagtatgctttc
gatgatgagcccaccccgtccccgcaggcctatgggggaacccccaatccccaaacacct
ggctacccagacccctcgtccccacaggtcaacccacaatacaacccgcagacgccaggg
acgccggccatgtacaacacagaccagttctctccctatgctgccccctccccacaaggt
tcctaccagcccagccccagcccccagagctaccaccaggtggcgccaagcccagcaggc
taccagaatacccactccccagccagctaccaccctacaccgtcgcccatggcctatcag
gctagccccagcccgagccccgttggctacagtcctatgacacctggagctccctcccct
ggtggctacaacccacacacgccaggctcaggcatcgagcagaactccagcgactgggta
accactgacattcaggtgaaggtgcgggacacctacctggatacacaggtggtgggacag
acaggtgtcatccgcagtgtcacggggggcatgtgctctgtgtacctgaaggacagtgag
aaggttgtcagcatttccagtgagcacctggagcctatcacccccaccaagaacaacaag
gtgaaagtgatcctgggcgaggatcgggaagccacgggcgtcctactgagcattgatggt
gaggatggcattgtccgtatggaccttgatgagcagctcaagatcctcaacctccgcttc
ctggggaagctcctggaagcctga

  All links  
Disease (1)   
   OMIM (1)   
Gene (28)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (8)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (40)   
   RefSeq(nuc) (6)   
   GenBank (17)   
   EMBL (17)   
3D Structure (43)   
   PDB (43)   
Protein domain (13)   
   Pfam (13)   
All databases (133)   

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