KEGG   Homo sapiens (human): 85301
Entry
85301             CDS       T01001                                 
Symbol
COL27A1, STLS
Name
(RefSeq) collagen type XXVII alpha 1 chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
hsa  Homo sapiens (human)
Pathway
hsa04820  Cytoskeleton in muscle cells
hsa04974  Protein digestion and absorption
Disease
H02300  Steel syndrome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    85301 (COL27A1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    85301 (COL27A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:hsa00536]
    85301 (COL27A1)
Glycosaminoglycan binding proteins [BR:hsa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   85301 (COL27A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2
Other DBs
NCBI-GeneID: 85301
NCBI-ProteinID: NP_116277
OMIM: 608461
HGNC: 22986
Ensembl: ENSG00000196739
UniProt: Q8IZC6
Position
9:114154098..114312511
AA seq 1860 aa
MGAGSARGARGTAAAAAARGGGFLFSWILVSFACHLASTQGAPEDVDILQRLGLSWTKAG
SPAPPGVIPFQSGFIFTQRARLQAPTGTVIPAALGTELALVLSLCSHRVNHAFLFAVRSQ
KRKLQLGLQFLPGKTVVHLGSRRSVAFDLDMHDGRWHHLALELRGRTVTLVTACGQRRVP
VLLPFHRDPALDPGGSFLFGKMNPHAVQFEGALCQFSIYPVTQVAHNYCTHLRKQCGQAD
TYQSPLGPLFSQDSGRPFTFQSDLALLGLENLTTATPALGSLPAGRGPRGTVAPATPTKP
QRTSPTNPHQHMAVGGPAQTPLLPAKLSASNALDPMLPASVGGSTRTPRPAAAQPSQKIT
ATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSR
PAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHK
PPPFTALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSE
ASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSS
SPRPTSSGYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPY
GNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHP
GEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVP
GKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMK
GLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSI
GFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLE
GQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPP
GVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSR
GLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPI
GPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPD
GLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAK
GYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPL
GPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQ
QGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGI
AGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQ
LGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGP
RGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGG
PIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPL
GTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKV
EFAISRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGG
QFRPEVSMDGCKVQDGRWHQTLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL
NT seq 5583 nt   +upstreamnt  +downstreamnt
atgggagcgggatcggcgcggggggcccgaggcacagcggcggcggcggcggcgcgcggg
ggggggtttctcttctcctggatcttagtctcgtttgcctgtcacctggcctccacccaa
ggagctcctgaagatgtggacatcctccagcggctgggcctcagctggacgaaggccggg
agccctgcacccccgggagtcattcctttccagtcgggcttcatctttacgcagcgggcc
cggctccaggctcccacgggcaccgtcattcctgccgccttgggcacagagctggcactg
gtgctgagcctctgctcccaccgggtgaaccatgccttcctcttcgctgtccgcagccag
aaacgcaagctgcagctgggcctgcagttcctccccggcaagacggtcgtccacctcggg
tcccggcgctcagtggccttcgacctcgacatgcacgacgggcgctggcaccacctggcc
ctcgagctccgaggccgcacagtcactctggtgactgcctgcgggcagcgccgggtgcct
gtcctgctgcctttccacagggaccctgcactcgaccctgggggctccttcctctttggg
aagatgaacccgcatgcagtccagtttgaaggtgctctctgccagttcagtatctaccct
gtgacgcaggtcgctcacaattactgtacccacctgaggaagcagtgtggacaggctgac
acgtaccagtccccactgggacctctcttctcccaagactctggcagaccttttaccttc
cagtccgacctcgccctgctaggcctggagaacttgaccactgccacaccagccctgggg
tcactgccagcaggcaggggacccagggggactgtggcacccgccacgcccaccaagccc
caaaggactagccccacaaaccctcaccagcatatggcggtgggaggcccagcccaaacc
ccgctgctacctgccaagctgtcagccagtaacgcacttgatcccatgctcccagcctct
gttggcggctctaccagaacgcctcgccctgcggccgctcaaccatcacagaagatcaca
gccaccaaaatccccaaaagcctccctaccaagccttcggccccttctacttcaattgtg
cccatcaaaagcccccatcctacccagaaaacagctccatcttcatttacaaagtcagcc
ctacccactcagaagcaagtgccacctacttcccgtccagttcctgccagagtctcccgt
cccgcagagaagcccatccagaggaacccgggaatgcccaggcccccaccgcccagcacc
cggcccctacctcctaccaccagctcctctaaaaaacccattcccacactagctcggact
gaggccaagataaccagccatgccagtaagccggcctctgcccgcaccagcacccacaaa
cctcccccatttactgctttatcctcatctcctgcccctactcctggttctaccaggagt
actcggccaccagccacgatggtacctccaacttcgggcaccagcactcccagaacagca
cctgccgtccccactcctggctcagctcccactggaagcaagaagcccattggatcggaa
gcctcaaagaaagccggacccaagagcagcccccggaagcctgtccccctcagacctggg
aaggcagccagggatgtccccttgagcgatctgacaaccaggcctagccccagacagccc
cagcccagtcagcagaccaccccggccctggtattggccccggcgcaattcctgtcctcc
agcccccggcccacgagcagtggctattcgatcttccacctggcaggatctacgcctttc
cctctgctgatggggcctccgggacccaagggagactgtggcttgccgggtccccctggg
ctacctgggctacctggaatccctggtgcacgtgggcctcggggtcctcctgggccttat
ggaaatccaggtctccccggccctcctggagccaaaggacagaaaggggacccagggctc
tcaccaggaaaggcccacgatggggcaaagggtgacatgggcttgcctgggctctccggg
aatccaggacctccgggacgaaagggacacaagggctatcctggaccggcagggcacccc
ggagaacaggggcagccaggacctgagggcagcccaggggccaaaggttaccctggcagg
caggggttacctggaccggtaggagatcccggccccaaaggcagcaggggctacattggg
ctcccagggctcttcggcctgccagggtctgatggagaacgaggcctgcctggcgttcct
ggcaagaggggcaagatgggtatgccggggtttcctggagtctttggggaaagaggccct
cctggactggatggaaatcctggagaactgggcctgccaggcccccctggagtccccggc
ctcattggtgacttaggagtgttgggtccgattggctacccgggacccaagggcatgaag
ggactgatgggcagcgtgggggagcccggactgaaaggtgataagggtgaacaaggggtt
ccaggtgtgtcaggagatcccggattccaaggagacaaggggagccaggggttgccaggg
ttccccggtgcacgggggaagccagggcctctgggcaaagtcggagacaaaggatccatt
gggtttcccgggccccctggacccgagggattcccaggagacatcggcccccctggcgac
aatggcccagaaggcatgaagggtaagcctggagcccgaggcctgccgggaccccgtggg
cagctggggcccgagggagatgagggacccatggggccgccaggggcccctggcttggag
ggtcagcctggcaggaaggggtttcctgggaggcccggcctggatggcgtgaagggggaa
ccaggggatcctggtcggccggggcctgtgggagagcagggatttatgggattcattggt
ctggtcggggagccaggaatcgtgggagaaaagggtgatcgtggcatgatgggaccccca
ggcgtgcctggacccaaggggtcgatgggtcatcctggaatgccaggtggtatggggacc
cctggagagcctggaccccagggtcctccaggatctcgaggcccaccaggcatgagggga
gcaaagggacgtcggggcccccgaggaccggacggaccagctggggagcaagggtccagg
ggcctgaagggccctccaggaccccagggcagaccgggccggcctggacagcagggtgtg
gctggtgagcgaggccacttgggctcgagaggctttcctggcatcccgggtccctcaggc
cccccaggcaccaagggcctcccaggagaaccgggccctcagggaccccaggggccaatt
gggcctccaggagagatgggacccaaggggccgcctggtgcagtgggagaaccgggcctt
cctggggaagccgggatgaagggtgaccttggacccctgggcactcctggggagcagggc
ctcattgggcaacggggagagccaggccttgagggtgacagtggccccatgggacctgat
gggctgaagggggacaggggagacccagggcctgatggagaacatggcgagaaaggccag
gaagggctgatgggtgaggacgggccccccggcccccctggcgtcactggtgtccggggt
cctgaaggaaaatcagggaagcaaggcgagaagggccgcactggagccaagggtgccaag
ggctatcaaggacagctgggtgagatgggcgtccctggagaccctggaccccctggcact
ccaggccctaaagggtcccggggcagcctgggaccaacgggtgctccgggacgcatgggg
gcccaaggagaaccgggactggctggttatgatggacacaaaggcattgtgggacccctt
ggacctcctggaccaaaaggcgaaaagggggagcagggcgaggacggcaaggctgagggg
ccccctgggccacctggagatcggggccctgtgggtgatcgaggagaccgcggggaaccg
ggagaccctgggtaccctggacaggagggtgtgcaaggcctccgtggaaagccaggccag
cagggccaacccgggcatccgggaccccgggggtggccgggacccaaaggatcgaaaggc
gcagagggaccaaagggaaagcaaggcaaggcaggggccccaggccggaggggggtccag
ggcctgcaggggctgccagggccccggggcgtggtggggagacagggcctcgagggcatc
gctggaccagatgggcttcctggcagggacgggcaagcaggacagcagggggagcaggga
gacgatggggaccctggccccatgggccctgctgggaagagaggaaatccaggtgtggcc
ggcttacctggagcacagggacccccaggattcaagggtgagagtgggttacccggacag
ctgggtccccctggcaagcgaggaacagagggcagaacggggctccctggaaaccagggg
gagcctgggtccaaaggccagccgggcgactctggcgagatgggcttcccaggaatggca
ggtctcttcggacccaagggcccgcctggagacattggcttcaaaggcatccagggccct
cgggggccacctggcttgatgggaaaggaaggcatcgtcgggcccctcggaatcctggga
ccttcgggactcccgggtccgaagggtgacaaaggcagccgtggggactggggattgcaa
ggtccgaggggtcctcccggccccagagggcggcccggccccccgggtcctccagggggt
cctatccaattgcaacaagatgatcttggggcagctttccagacgtggatggacaccagt
ggagcactcaggccagagagttacagctatccagaccggctggtgctggaccagggagga
gagatctttaaaaccttacactacctcagcaacctcatccagagcattaagacgcccctg
ggcaccaaagagaaccccgcccgggtctgcagggacctcatggactgtgagcagaagatg
gtggatggtacctactgggtggatccaaaccttggctgctcctctgacaccatcgaggtc
tcctgcaacttcactcatggtggacagacgtgtctcaagcccatcacggcctccaaggtc
gagtttgccatcagccgggtccagatgaatttcctgcacctgctaagctccgaggtgacc
cagcacatcaccatccactgccttaacatgaccgtgtggcaggagggcactgggcagacc
ccagccaagcaggccgtacgcttccgggcctggaatggacagatttttgaagctgggggt
cagttccggcccgaggtgtccatggatggctgcaaggtccaagatggccgctggcatcag
acactcttcaccttccggacccaagacccccaacagctgcccatcatcagtgtggacaac
ctccctcctgcctcatcagggaagcagtaccgcctggaagttggacctgcgtgcttcctc
tga

  All links  
Disease (2)   
   OMIM (2)   
Gene (91)   
   RefGene (84)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (29)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (27)   
DNA sequence (52)   
   RefSeq(nuc) (30)   
   GenBank (11)   
   EMBL (11)   
Protein domain (3)   
   Pfam (3)   
All databases (177)   

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