KEGG   Homo sapiens (human): 9410
Entry
9410              CDS       T01001                                 
Symbol
SNRNP40, 40K, HPRP8BP, PRP8BP, PRPF8BP, SPF38, WDR57
Name
(RefSeq) small nuclear ribonucleoprotein U5 subunit 40
  KO
K12857  Prp8 binding protein
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Network
nt06547  Spliceosome
  Element
N01969  U4/U6-U5 snRNP fomation
N01970  Spliceosome assembly (B complex formation)
N01971  spliceosome activation
N01972  Spliceosome catalysis (branching)
N01993  Spliceosome catalysis (exon ligation)
N01994  Spliceosome disassembly
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9410 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    9410 (SNRNP40)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    9410 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    9410 (SNRNP40)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin Beta-prop_TEP1_C DSE1_N Beta-prop_WDR75_1st Beta-prop_EML PAC11 NBCH_WD40 Beta-prop_WDR41 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 CFAP251_N Beta-prop_IFT140_1st ASA1 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_VPS8 TRM82_WD eIF2A Beta-prop_WDR35_TULP_N Beta-prop_ACSF4 Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160 TP_0598_N PD40
Other DBs
NCBI-GeneID: 9410
NCBI-ProteinID: NP_004805
OMIM: 607797
HGNC: 30857
Ensembl: ENSG00000060688
UniProt: Q96DI7 A0MNP2
Structure
Position
1:complement(31259568..31296788)
AA seq 357 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIM
LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD
GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD
IRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTG
LSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKI
AAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgtaagggcccagagttgccgctggttccagtcaagcggcag
cggcatgagttgctgttgggagcggggtctggcccaggagccgggcagcagcaggcgacg
ccgggagccttgctgcaagcgggacctccaagatgttcctcccttcaagccccaatcatg
ctgctctctggacatgaaggggaagtctactgctgcaagttccaccccaacggatccacc
ttagcatctgcaggatttgaccgactgatattactgtggaatgtctatggtgactgtgat
aactatgccacactgaagggacacagtggagcagtgatggaattgcattacaacacagat
ggcagtatgcttttctcagcatccacagataaaaccgtggctgtgtgggatagtgaaaca
ggtgagagggttaaaaggctaaagggacatacttcctttgtgaattcctgttatccagcc
aggagaggccctcagcttgtctgcactggcagtgacgatggcacagttaagctttgggac
atccggaagaaagcagccatccagacatttcagaacacgtaccaggtgttagctgtgacc
ttcaatgacacaagtgatcagattatttctggtggaatagacaatgatatcaaggtctgg
gacctgcgccagaacaagctaacctacaccatgagaggccatgcagattcagtgactggc
ctgagtttaagttctgaaggctcttatcttttgtccaatgcaatggacaatacagttcgt
gtctgggatgtccggccatttgcccccaaagagagatgtgtaaagatatttcaaggaaat
gtgcacaactttgaaaagaaccttctgagatgttcttggtcacctgatggaagcaaaata
gcagctggctcagccgacaggtttgtttatgtgtgggataccacaagcaggagaatattg
tataagctgcccggccatgctggctccatcaatgaagtggctttccaccctgatgagccc
atcattatctcagcatcgagtgacaagagactgtatatgggagagattcagtga

  All links  
Disease (1)   
   OMIM (1)   
Gene (11)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (5)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (21)   
   RefSeq(nuc) (1)   
   GenBank (10)   
   EMBL (10)   
3D Structure (53)   
   PDB (53)   
Protein domain (47)   
   Pfam (47)   
All databases (137)   

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