KEGG   Homo sapiens (human): 9582Help
Entry
9582              CDS       T01001                                 

Gene name
APOBEC3B, A3B, APOBEC1L, ARCD3, ARP4, DJ742C19.2, PHRBNL, bK150C2.2
Definition
(RefSeq) apolipoprotein B mRNA editing enzyme catalytic subunit 3B
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
hsa  Homo sapiens (human)
Pathway
hsa05170  Human immunodeficiency virus 1 infection
Network
nt06134  CGAS-STING signaling (viruses and bacteria)
nt06161  Human immunodeficiency virus type 1 (HIV-1)
  Element
N00440  HIV Vpu/Vif/Vpr to cGAS-STING signaling pathway
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    9582 (APOBEC3B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    9582 (APOBEC3B)
Enzymes [BR:hsa01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.-  
     9582 (APOBEC3B)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     9582 (APOBEC3B)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: NAD2 APOBEC2 NAD1 APOBEC_N SNAD4 APOBEC3 APOBEC_C APOBEC4_like APOBEC4 APOBEC1 dCMP_cyt_deam_1 Viral_Rep Toxin-deaminase
Motif
Other DBs
NCBI-GeneID: 9582
NCBI-ProteinID: NP_004891
OMIM: 607110
HGNC: 17352
Ensembl: ENSG00000179750
Vega: OTTHUMG00000151085
Pharos: Q9UH17(Tbio)
UniProt: Q9UH17
Structure
PDB: 

Position
22q13.1
AA seq 382 aa AA seqDB search
MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
EAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN
THVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWD
GLEEHSQALSGRLRAILQNQGN
NT seq 1149 nt NT seq  +upstreamnt  +downstreamnt
atgaatccacagatcagaaatccgatggagcggatgtatcgagacacattctacgacaac
tttgaaaacgaacccatcctctatggtcggagctacacttggctgtgctatgaagtgaaa
ataaagaggggccgctcaaatctcctttgggacacaggggtctttcgaggccaggtgtat
ttcaagcctcagtaccacgcagaaatgtgcttcctctcttggttctgtggcaaccagctg
cctgcttacaagtgtttccagatcacctggtttgtatcctggaccccctgcccggactgt
gtggcgaagctggccgaattcctgtctgagcaccccaatgtcaccctgaccatctctgcc
gcccgcctctactactactgggaaagagattaccgaagggcgctctgcaggctgagtcag
gcaggagcccgcgtgacgatcatggactatgaagaatttgcatactgctgggaaaacttt
gtgtacaatgaaggtcagcaattcatgccttggtacaaattcgatgaaaattatgcattc
ctgcaccgcacgctaaaggagattctcagatacctgatggatccagacacattcactttc
aactttaataatgaccctttggtccttcgacggcgccagacctacttgtgctatgaggtg
gagcgcctggacaatggcacctgggtcctgatggaccagcacatgggctttctatgcaac
gaggctaagaatcttctctgtggcttttacggccgccatgcggagctgcgcttcttggac
ctggttccttctttgcagttggacccggcccagatctacagggtcacttggttcatctcc
tggagcccctgcttctcctggggctgtgccggggaagtgcgtgcgttccttcaggagaac
acacacgtgagactgcgcatcttcgctgcccgcatctatgattacgaccccctatataag
gaggcgctgcaaatgctgcgggatgctggggcccaagtctccatcatgacctacgatgag
tttgagtactgctgggacacctttgtgtaccgccagggatgtcccttccagccctgggat
ggactagaggagcacagccaagccctgagtgggaggctgcgggccattctccagaatcag
ggaaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Network (1)   
   KEGG NETWORK (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (9)   
   OC (1)   
   PHAROS (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
Protein domain (13)   
   Pfam (13)   
All databases (73)   

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