KEGG   Acetivibrio saccincola: HVS_03285
Entry
HVS_03285         CDS       T05223                                 
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase YjcD
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
hsc  Acetivibrio saccincola
Pathway
hsc03420  Nucleotide excision repair
hsc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hsc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HVS_03285 (yjcD)
   03430 Mismatch repair
    HVS_03285 (yjcD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hsc03400]
    HVS_03285 (yjcD)
Enzymes [BR:hsc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HVS_03285 (yjcD)
DNA repair and recombination proteins [BR:hsc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HVS_03285 (yjcD)
   MMR (mismatch excision repair)
    Other MMR factors
     HVS_03285 (yjcD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_12 ResIII AAA_11 PcrA_UvrD_tudor AAA_30
Other DBs
NCBI-ProteinID: AUG56605
UniProt: A0A2K9EBM3
Position
710571..712685
AA seq 704 aa
MGFFGVLEKNYKINLNNQQKEAVTHTRGPALVLAGPGSGKTTVIVSRTAYLILELKIKPE
NILTLTFNRAAKIEMEKRFNRVFSDLISGKKVHFSTFHSFCNLVVKDYEKMQGKYLSRIE
GNEESKNNKRLILKEIYENINGSRINDDQLENLINDIGIIKNKMIKNIQEFETNIKNFSR
IYNSYEEYKKANLLMDFDDMLTFAYVILKKFPSILKKYTGRYTFIQVDEGQDLSKIQFEI
LKLLTGPGDLAGFKEKNIFIVADDDQSIYGFRGAEPEYILNVEKQFGGCSFYYLNNNYRS
TANIVHVSSNFIKNNTRRYEKKHSTCNEYKYDPFIIEARDQTAQYNFIVDKVNEHLSKKR
DSTIALLYRNNISSIPLAEALDRNGIAFNVKQNKLFFFNHWAVQDILAFLKFSLDQTDID
SFSRIYYKMNRYISKAMLEYALKAGYKNSVIDGILKDSDLETYRKMTLLNVKSEFKKLSK
KKPFDALNYIEKNFNYFGYVKEYCDGTGLFYDYIYSLFGVLKVMALKCKKITDYLERIEE
VKELLENPSSESRVTISTIHSSKGLEYDCVMMLDMLNTELPGESAIDLAREENKAELLEE
ERRLFYVGITRAKEYLYLIYPNFRNGFKEERTIFIDEVLECMRVKTLNDIAEGMIVNHKH
FGKGVIAAILEENKDKVIVEIDFNGVRRKFDLIMCLEKGILKIY
NT seq 2115 nt   +upstreamnt  +downstreamnt
gtgggtttttttggggtattagaaaaaaactacaaaataaatcttaacaatcaacaaaaa
gaagcagtaacacataccagaggaccagccctagtgttggctggtccgggatctggaaaa
accactgtaattgtttcaaggactgcttatcttatactagagcttaaaataaagccggaa
aacattctcaccttgacatttaacagggctgcaaaaatcgaaatggaaaaaaggtttaat
agagtattcagtgatttaatttcaggcaaaaaagttcatttttcaacttttcatagcttt
tgcaatttagtggtaaaagattatgaaaagatgcagggaaagtatttgtccagaattgaa
ggcaatgaggagtcaaaaaataataaaaggctgattttaaaagaaatatatgaaaatata
aacggcagtcggataaatgacgaccaacttgaaaatctcataaatgacattggcattata
aaaaataaaatgataaaaaatattcaagaatttgaaacaaatattaagaatttttcccgt
atatataatagttacgaagaatataagaaggcaaatttactgatggattttgacgacatg
cttacatttgcctatgtcattttaaaaaagttccctagtattttaaaaaagtataccgga
aggtatacttttattcaagtagatgaaggacaggacctttcaaagattcagtttgaaatt
ttgaagcttttaacaggtcctggggatttggcgggttttaaggaaaagaatatttttata
gttgcagatgatgaccagtccatatatgggttcaggggggcagaaccggaatatatactt
aatgtggaaaagcagtttggcggatgttccttctattatcttaacaacaactaccgttct
acagctaatatagtacatgtaagcagtaattttataaaaaacaataccagaaggtatgag
aaaaaacacagtacttgtaatgaatataagtatgacccttttattatagaggcaagggat
cagactgcccagtataattttattgtggacaaggtaaatgaacatttgagtaaaaaaaga
gattctaccattgcccttctttacagaaataatatttcttctattccgctggcagaagcc
cttgacagaaacggaatagcttttaatgtaaagcaaaacaaattgtttttctttaaccac
tgggctgtacaggatattttagcttttttaaaattttcactggatcaaacagacatagat
tctttttcaagaatatactacaaaatgaacaggtatatttcaaaagcaatgttagaatat
gctctgaaggctggttataaaaattcagttatagacgggattttaaaggatagtgattta
gagacatacagaaaaatgacccttttaaatgtcaaaagtgagtttaaaaagctgtctaag
aaaaagccttttgatgctttaaactacattgaaaaaaactttaactattttggctatgta
aaagaatactgtgacggaacaggtcttttttatgattatatatacagcctttttggggtt
ttgaaagtaatggctttaaaatgcaaaaaaattactgattatttggaaaggattgaggaa
gtaaaggaacttttagaaaatccgtcatcggaatccagagtgaccatatccactatacac
tcaagcaaaggattggagtatgactgcgttatgatgctggatatgctaaacaccgagctg
ccgggtgaaagtgctattgaccttgcaagagaggaaaataaagcagagcttcttgaagag
gaaagaaggctgttttatgttggaattacaagggcaaaggagtatctgtatttaatatat
ccaaatttcaggaatggatttaaggaagaaaggacaatttttatagatgaagtattggaa
tgtatgagagtgaagactttaaatgacattgcagaagggatgattgtaaatcataagcac
tttggaaaaggggtaattgcagcaattttggaggaaaataaagacaaggttattgtagaa
attgattttaacggtgtaaggcgtaagtttgacttaattatgtgcctggaaaaaggtatt
ctaaaaatatattag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (95)   
   KEGG ORTHOLOGY (1)   
   RefGene (92)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (112)   

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