KEGG   Herbinix luporum: SD1D_1704
Entry
SD1D_1704         CDS       T04072                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hsd  Herbinix luporum
Pathway
hsd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hsd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SD1D_1704 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsd03019]
    SD1D_1704 (rnr)
   03016 Transfer RNA biogenesis [BR:hsd03016]
    SD1D_1704 (rnr)
Enzymes [BR:hsd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SD1D_1704 (rnr)
Messenger RNA biogenesis [BR:hsd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SD1D_1704 (rnr)
Transfer RNA biogenesis [BR:hsd03016]
 Prokaryotic type
  tRNA degradation factors
   SD1D_1704 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 CSD TBPIP OB_Dis3 RNase_II_C_S1 Peptidase_M18 2-oxoacid_dh RasGAP_C
Other DBs
NCBI-ProteinID: CUH93249
UniProt: A0A0K8J736
Position
I:complement(1819479..1821614)
AA seq 711 aa
MRSNDKIEERKKMLEEFFASEEYKPMRFRDIVSLLQVPKDSKHELKEILDSLISQGVIVL
DDKGRYKIPGDNIKTGIFSATQRGFGFVILEGEAEDIFIPENATKGAVHGDKVRIMLSNE
RTGRRQEGIVLQILERGIKEIVGTFQASKNFGFVIPDNQKFGHDIFIPKEDTKGAVTGHK
VVVSLTSYGDEKRSPEGKVVEIIGHVNDPGVDIMSVIKAYDLPVEFPKDVFRILDYVPDE
VDPKEIGKRRDLRDIQTVTIDGEDAKDLDDAISLTKEGDIYHLGVHIADVTHYVKEGSAL
DKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNPGVDRLALSCFMDIDQNGNVISHEIVE
TVIRSDKRMTYTDVSKIIEDKDEELIKKYQDFVPMFMQMLELSEILKMRRHKRGAINFDF
PESKIIVDYNGKPIEIRAYERNKATKIIEEFMLIANETIAENFFWQELPFLYRTHDKPDD
EKIKALSIFIHNFGYSIKMGNEDIHPKELQKLLNKIEDTPEEALISRLTLRSMKQAKYTV
ANTGHFGLSAKYYCHFTSPIRRYPDLQIHRIIKENINGKLNEDRKNHYEKILFEVADHSS
KTERRAEEAEREVEKMKKVEYMMDHIGETFEGVISGVTSWGIYVELPNTVEGMVRVSEMD
DDYYVYDGERYQMVGEHTKKTYKLGQKVKVRVINADKLIRTIDFELVEVEE
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgagaagtaatgataagatagaagaaagaaaaaaaatgcttgaagagttttttgcaagc
gaagaatataagcccatgagatttagggatattgtaagtttactgcaggtaccaaaagat
tctaaacatgaattaaaagaaatactagattccttaatatcccaaggggttattgtcctt
gatgataagggaagatataaaattccgggagataatattaaaaccggaatattttccgca
actcaaaggggatttggttttgttatattagaaggtgaagcagaggacatctttatacct
gaaaatgccactaaaggagcggtacacggtgacaaggttagaataatgctaagtaatgaa
cgtaccggcagaaggcaggaaggtatagtattgcagatacttgaaaggggtattaaggaa
attgtaggtacctttcaagccagcaaaaattttggttttgtaattcccgataatcaaaag
tttggacatgatatttttattcccaaggaagatacaaaaggagctgttaccggccataag
gtagtggtatctttaacaagttatggggatgaaaagcgcagtcccgaggggaaagtggtt
gaaatcatcggacatgtcaacgatcccggggttgatataatgtctgtaattaaggcctat
gatttgccggtggagtttcccaaggatgtatttagaatattagattatgtaccggatgag
gtagaccctaaggagataggaaagagaagggatctaagagatattcagaccgttaccata
gacggtgaagatgccaaggaccttgatgatgccatatctttaacaaaagaaggggatata
tatcatctgggggtacacatagcagatgtaacccactatgttaaggaaggctctgccctt
gataaagaggccttaaaaaggggaaccagtgtatatctggtagacagagttatccctatg
ctaccccataagctttccaatggtatctgttctttaaatccgggggtagatagactggct
ttaagctgctttatggatattgatcaaaatggcaatgtaataagccatgaaatagtagag
acagttatccgttcagataagcgtatgacttatacggatgtatctaaaattatagaagat
aaggatgaagagttaattaaaaaatatcaagattttgttcctatgtttatgcagatgctt
gaactgtctgaaatattaaagatgcgcaggcataaaagaggagccataaattttgatttt
cctgaaagtaaaattattgtagattataatggaaagcctattgagataagggcctatgaa
agaaataaagctactaagattattgaggagtttatgcttattgccaatgaaactatagct
gaaaacttcttctggcaagaactgccatttttgtatcgtacccatgataagccagatgat
gaaaaaattaaggcactttccatttttattcataactttggctatagtatcaagatggga
aatgaagatatacatcctaaggaacttcaaaaactccttaataagatagaagatactccg
gaagaagctttaatcagccgtcttaccttgcggtctatgaaacaggcaaaatacacagtg
gcaaatacaggacattttggcctgtcagccaaatattactgccattttacttcacctatc
cgtaggtatccggaccttcagatacatcggattattaaggaaaatataaatggaaaactg
aatgaagataggaaaaatcattatgaaaaaatactatttgaagtagctgatcattccagt
aagacagaacgtagggctgaagaagccgagcgggaagtagaaaagatgaaaaaggtagaa
tatatgatggatcatataggggaaacctttgaaggagttatctcaggggttacaagttgg
ggcatctatgtggaacttcccaacaccgtagaaggaatggttagagtaagcgaaatggat
gatgattactatgtatatgacggggagcggtatcagatggtaggtgaacatactaaaaag
acatataaattgggacaaaaagttaaggttcgggttattaatgccgataagctaatccgg
acaattgattttgaattagtggaggttgaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (81)   
   KEGG ORTHOLOGY (1)   
   RefGene (78)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (100)   

Download RDF
DBGET integrated database retrieval system