KEGG   Herbaspirillum seropedicae SmR1: Hsero_3179
Entry
Hsero_3179        CDS       T01268                                 
Symbol
dppF1
Name
(GenBank) ABC-type oligopeptide transport system, ATPase component protein
  KO
K02032  peptide/nickel transport system ATP-binding protein
Organism
hse  Herbaspirillum seropedicae SmR1
Pathway
hse02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:hse00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Hsero_3179 (dppF1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:hse02000]
    Hsero_3179 (dppF1)
Transporters [BR:hse02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    Hsero_3179 (dppF1)
SSDB
Motif
Pfam: ABC_tran AAA_21 Mg_chelatase AAA_22 oligo_HPY RsgA_GTPase nSTAND3 AAA_16 AAA_29 ATP-synt_ab AAA_5 nSTAND1 Zeta_toxin AAA NB-ARC MMR_HSR1 NACHT PRK RNA_helicase
Other DBs
NCBI-ProteinID: ADJ64661
UniProt: D8J192
Position
complement(3636872..3637714)
AA seq 280 aa
MSNSHQAPAPLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGES
GCGKSTLAKMLLGLLPPTSGNVLINGQEVDPTERKAHARHIQPIFQDPYSSLNPRKTVAE
IVGLPLKLHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRP
DILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSI
VELQSREQLFSEPQHLYTRMLLASALTPDPGRGIPALAAA
NT seq 843 nt   +upstreamnt  +downstreamnt
atgagcaattcccatcaagcgccggcgccgctggacgatatcgccctggagctgtgcgcg
ctgaccaaggtctatccgctcaagcgcggattgttccagccccccgggcaactcaaggcg
gtcaatgacgtgtcgctgcgcctgtaccgtggcgagacgctcgggctggtgggcgaatcc
ggctgtggcaagagcaccctggccaagatgctgctgggcctgctgccgccgacctccggc
aatgtgctcatcaatggccaggaagtcgatccgaccgagcgcaaagcgcatgcgcgccat
atccagcccatcttccaggacccgtattcctcgctcaatccacgcaagaccgtggccgag
atcgttggcctgcccttgaagctgcatggtatcggcaatgccgccgaacgcaaccgccag
gtcaaggacatcctcgatctggtgggcatgcccgagcgcacccatgcccaatatcccaac
cagctctccggcggccagcgccagcgggtggccattgcgcgggcgctgatcctgcgtccg
gacatcctcatctgcgacgagccgacctcggcgctggatgtgtcggtgcaggcgcagatc
ctgaacctgctgctggacctgaaggccgagttcggcctgacctatctgttcatcagccac
gacctgggcgtggtggaacacctggtggaccgcgtggccgtgatgaaccagggcagtatc
gtcgagctgcagagccgcgagcagctcttcagcgagccccagcatctctatacccgcatg
ttgctggcctcggccctcacgcccgatccgggacggggcatcccggcgctggccgccgcc
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (30)   

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