KEGG   Herbaspirillum seropedicae SmR1: Hsero_3964
Entry
Hsero_3964        CDS       T01268                                 
Symbol
uvrA
Name
(GenBank) excinuclease ATPase subunit protein
  KO
K03701  excinuclease ABC subunit A
Organism
hse  Herbaspirillum seropedicae SmR1
Pathway
hse03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hse00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Hsero_3964 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hse03400]
    Hsero_3964 (uvrA)
DNA repair and recombination proteins [BR:hse03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Hsero_3964 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Hsero_3964 (uvrA)
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_16 AAA_29 AAA_23 nSTAND1 RsgA_GTPase DnaJ_CXXCXGXG AAA_21 nSTAND3 NACHT APS_kinase AAA_25 cobW BCA_ABC_TP_C fvmX3
Other DBs
NCBI-ProteinID: ADJ65435
UniProt: D8ISL9
Position
4546395..4549253
AA seq 952 aa
MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC
PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI
QSGTGTAKVYEVDDLPKLKKTEKHTIDVVIDRVKVKADIKQRLAESFETALRLADGRAIA
LEMDSGKEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVA
FPNLSLASGAIKGWDRRNQFYFQMLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGRQTI
PFAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGARLRV
EARYVKVGSGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTFLNN
VGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIDTLK
HLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTAKYL
NGSLEIAVPKKRTPCDESRMLTISGATGNNLKNVDLELPVGLLTCVTGVSGSGKSTLVND
TLYLSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFTPIRD
LFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKRYNR
ETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATTLSGG
EAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIEHNLD
VIKTADWIIDLGPEGGAGGGRIVAAGTPEEVAKNPASVTGKYLAPLLKKKSK
NT seq 2859 nt   +upstreamnt  +downstreamnt
atggaagaaattcgcattcgcggcgcgcgcacgcataacctcaagaatatcaacctagac
ctcccccgcaacaagctcatcgtcatcaccgggctgtccggttcgggcaagtcatcgctg
gccttcgatacgctctatgccgagggtcagcgccgctacgtggagtcgctgtcggcctat
gcgcgccagttcctgcaactgatggaaaagcccgatgtggacatgatcgaaggcctgtcc
ccggcgatttccatcgagcagaaggcgacctcgcacaacccgcgctccaccgtgggcacg
gtcaccgagatccacgactacctgcgcctgctgtacgcccgcgtcggcacgccctactgc
cccgaccaccccgaacatccgctggaggcccaatcggtctcgcagatggtcgatgccgtg
ctggcgctgccggaagacaccaagctgatgatcatggcgccggtggtagccaaccgcaag
ggcgagcatgccgacctgttcgaagagatgcaggcccagggcttcgtgcgcttccgcatc
cagagcggcaccggcacggccaaggtgtatgaagtcgatgacctgcccaagctcaagaag
accgagaagcacaccatcgacgtggtcatcgaccgcgtcaaggtcaaggcggacatcaag
cagcgcctggccgagagcttcgagaccgcgctgcgcctggccgatggccgcgccatcgcg
ctggagatggacagcggcaaggagcacctgtattccaacaagttcgcctgccccatctgc
ggctattcgctgcaggagctggagccgcgcctgttctccttcaacaaccccatgggcgcc
tgcccggaatgcgatggcctgggccatatcgagttcttcgatcccaagcgcatcgtcgcc
ttccccaacctgtcgctggcctcgggcgcgatcaagggctgggatcgccgcaaccagttc
tatttccagatgctcaccagcatcgctgcctactacggcttcgacctggatgtgcccttc
gagcagctcgacgacaaggcccagcaagctgtgctctatggctcgggccgccagaccatt
ccgtttgcctacgtcaacgagcgcgggcgcaccgtggtcaaggagcacaccttcgagggc
gtggtcaacaacctgcagcgccgctatcgcgaaaccgattcgatggcggtcaaggaagag
ctggccaagttcatcaacgagaagcagtgcccgtcctgccatggcgcgcgcctgcgggtg
gaagcgcgttacgtgaaggtgggcagcggcaagcagcagcgcgccatctatgaagtggcc
gctacgcccctgcgcgagaccctgtccttcttcgagaccctgaagctgaccggagcaaag
aaggaaatcgccgaccgcatcatcaaggaaatcgtctcgcgcctgaccttcctcaacaac
gtcggcctggactacctctcgctggaacgcagcgccgatacgctctccggcggcgaagcc
cagcgcatccgcctggcctcgcagatcggctcgggcctgaccggtgtgatgtatgtgctg
gatgaaccttccatcggcctgcaccagcgcgacaacgaccgcctcatcgatacgctcaag
cacctgcgcgacatcggcaacaccgtgctggtggtggaacacgatgaagacgccatccgc
accgccgactacgtggtggacatgggtatcggcgcgggcgtgcatggcggtgacgtgatc
gcccatggtccactgccggacatcctcaagaacaagaagtcgctgacggccaagtatctc
aatggctcgctggaaattgcggtacccaagaagcgcaccccctgcgacgaatcgcgcatg
ctgaccatcagcggcgccaccggcaacaacctgaagaacgtcgacctggaactgccggtg
ggcctcttgacctgcgtgaccggcgtgtccggttcgggcaagtcgacgctggtcaacgat
accctgtacctgtcagcggcccgtcacctgtatggctcgcagaccgaaccggccgcgcat
gaggccatcggcggactggaacacttcgacaaggtcattgccgtggaccaggccccgatc
ggccgcaccccgcgctccaacccggctacctacacgggcctgttcacgccgatccgcgat
ctgttcgccaccgtgcccatggccaaggaacgcggctacagcgccgggcgcttctccttc
aacgtcaagggcggccgctgcgaagcctgccagggcgatggcgtgatcaaggtggagatg
cacttcctgccggacgtgtacgtgccttgcgacgtctgccacggcaagcgctacaaccgc
gagacgctggaagtgcagtacaagggcaagaacatcaccgagatcctcgacatgacggtg
gaagacgcgcacgagttcttcaaacccgtgccgctgatcgcccgcaagctgcagacgctg
ctggatgtgggcctgggctatatcaagcttggccagagcgccaccaccctctcgggcggc
gaggcgcagcgcgtgaagctgtcgctggaactgtccaagcgcgataccggccgcacgctc
tatatcctggatgagccgaccaccggcctgcacttccacgatatcgacctactgctcaag
gtgatccatcgcctgcgcgaccagggcaatacggtgaccatcatcgagcacaacctggat
gtcatcaagaccgccgactggatcatcgacctgggccccgagggcggtgcgggcggcggt
cgtatcgtggccgccggcacgcccgaggaggtggcgaagaacccggccagcgtcaccggc
aagtacctggcgccgctgttgaagaagaagtcgaagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (39)   

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