KEGG   Halobacterium salinarum R1: OE_1528F
Entry
OE_1528F          CDS       T00662                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
hsl  Halobacterium salinarum R1
Brite
KEGG Orthology (KO) [BR:hsl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hsl03032]
    OE_1528F (topA)
   03400 DNA repair and recombination proteins [BR:hsl03400]
    OE_1528F (topA)
Enzymes [BR:hsl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     OE_1528F (topA)
DNA replication proteins [BR:hsl03032]
 Prokaryotic type
  DNA Topoisomerases
   OE_1528F (topA)
DNA repair and recombination proteins [BR:hsl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      OE_1528F (topA)
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim HHH_5 HHH DUF4332 Cdd1 Toprim_2 HHH_8 Toprim_4
Other DBs
NCBI-ProteinID: CAP13175
UniProt: B0R363
Position
265641..268130
AA seq 829 aa
MELIVTEKNNAARRIADILSEGGASTTQTAGVNVYEWGGRRCIGLSGHVVGVDFPPEYND
WRDVEPAELIHADVVKDPTQEDIVNALQRLAREADDVVIATDYDREGELIGKEAYELVRE
VNEQAPVNRVRFSSITDTEVRSAFADPDDIDFDLAAAGEARQIVDLMWGASLTRFLSLSA
GQMGEDFISVGRVQSPTLKLIVDKEREIEAFDPDDYWELFADLRKDQTTFEAQYFYEDPA
DGTEAERVWNEGDADAAFDALRQAGEAVVDSVSRRTRTDDPPAPFNTTQFIRAAGSLGYS
AGRAMSIAEDLYTAGYITYPRTDNTVYPDDLDERDLLEAFQQTVFGDDADSLLDQDRLSP
TSGDEETTDHPPIHPTTDFPDRNQLSEDEWAVYELVVRRFFATVAAPAEWAHLRVTADAD
GESLKANGKRLVEAGYHAVYPYYDSSENHVPPVEEGDTLAITDARLDAKQTQPPRRYGQS
RLIETMESMDIGTKSTRHNTIEKLYDRGYIENDPPRPTTLAEAVVEAAEDYADVVVSEEM
TSQLEADMTAIADGETTLDDVTTESREMLDRVFDELTASRAEIGDHLRTSLKADKSLGPC
PECGDTLLLRQSRTGSHFVGCDGYPECQFTLPLPSTGDPLVMDAVCEDHDLHDVKMLAGR
NTFVHGCPLCAAEAADESEDRLIGPCPDCGEPHGGELAIKQLQSGSRLVGCDRYPDCEYS
LPLPRRGDIEVTETYCDEHALPELVVHDGEDDDPWELGCPICNYEEYQARQRQQGLEALD
GVGPKTAAKLESAGVEDVGALADADPEGIADAVSGVSADTIREWQAQAD
NT seq 2490 nt   +upstreamnt  +downstreamnt
gtggaactcatcgtcacagagaagaacaacgccgcgcggcgcatcgccgacatcctctcc
gagggaggggcgtcgacgacacagaccgcgggcgtgaacgtctacgagtggggtggccgg
cgctgcatcgggctgtccggccacgtcgtcggggttgatttcccgccggagtacaacgac
tggcgggacgtcgagcccgcggaactgatccacgccgacgtggtgaaagacccgacccag
gaggacatcgtgaacgcgctccagcggctcgctcgggaggccgacgacgtggtcatcgcg
accgactacgaccgcgagggcgagctcatcgggaaggaggcctacgagctcgtccgcgag
gtgaacgagcaggcaccggtcaaccgcgtgcggttctcctcgatcacggacaccgaggtg
cggtcggcgttcgcagaccccgatgacatcgacttcgacctcgcggccgccggcgaagcc
cgccagatcgtcgacctgatgtggggggcgtcgctgacccggttcctgtcgctgtcggcg
ggccagatgggcgaggacttcatctccgtgggccgggtgcagtcgcccacgctgaagctc
atcgtggacaaggaacgcgagatcgaggcgttcgatcccgacgactactgggagctgttc
gcggacctccggaaagaccagaccaccttcgaggcgcagtacttctacgaggaccccgcg
gacggcaccgaggccgagcgcgtctggaacgagggcgacgccgacgccgcgttcgacgcc
ctccggcaggccggcgaggcggtcgtcgactccgtgtcccgccggactcgcaccgacgat
ccgcccgcgccgttcaataccacgcagttcatccgcgccgcgggctcgcttggctactcg
gcgggccgcgcgatgagcatcgccgaggacctctacaccgcgggctacatcacgtacccc
cgcaccgacaacaccgtctaccccgacgacctcgacgagcgcgacctgctggaagccttc
cagcagacggtgttcggggacgacgccgattcgctgctcgaccaggaccgcctctcgccg
accagcggcgacgaggagaccaccgaccacccgccgatccatccgacgacggacttcccc
gaccgcaatcagctctccgaggacgaatgggcggtctacgaactcgtcgtgcggcggttc
ttcgcgacggtcgccgcgcccgccgagtgggcgcatctccgcgtcaccgcggacgccgac
ggcgagtccctgaaggccaacgggaaacgcctcgtcgaggcgggctaccacgcggtctac
ccgtactacgacagctccgagaaccacgtgccgcccgtcgaggagggcgacacgctcgcc
atcaccgacgcccgactggacgccaaacagacccagccaccgcgccggtacgggcagagc
cggctcatcgagacgatggagtcgatggacatcgggacgaagtcgacgcggcacaacacc
atcgagaagctttacgaccgcggctacatcgagaacgaccccccgcggccgacgacgctc
gcggaggcggtcgtggaggccgccgaggactacgccgatgtcgtggtcagcgaggagatg
accagccaactggaggcggacatgaccgccatcgccgacggcgaaacgacactcgacgac
gtgaccacggagtcccgggagatgctcgaccgggtgttcgacgaactcaccgcttcccgg
gctgagatcggcgaccacctccgcacgtcactgaaagccgacaaatcactcggcccctgt
ccggagtgtggcgacacgctgttgctccggcagtcccgcaccggatcgcatttcgtgggc
tgcgatggctacccggagtgccagttcacactcccgctgccgtcgaccggcgacccactc
gtcatggacgccgtctgtgaggaccacgacctccacgacgtgaagatgctcgccggccgg
aacacgttcgtccacggctgcccgctgtgcgcggccgaggcggccgacgagtccgaggac
cgactcatcgggccgtgtccggactgcggcgaaccccacggcggcgaactcgccatcaag
cagctccagtcgggcagccggctcgtcggctgcgaccgctatccggactgcgagtactcg
ctgccgctgccccgacgcggcgacatcgaggtcacggagacgtactgcgacgagcacgcc
ctccccgaactcgtcgtccacgacggcgaggacgacgacccctgggagctcggctgcccc
atctgcaactacgaagagtaccaggcccgccagcgccagcagggactcgaagcactggac
ggcgtcggtccgaaaaccgctgcaaaactcgaatcggccggggtcgaggacgtcggcgcg
ctcgccgacgccgacccagaggggatcgccgacgcggtctcgggcgtcagtgccgacacg
atccgagagtggcaagcgcaggcggactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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