KEGG   Herbaspirillum seropedicae Z67: ACP92_01980
Entry
ACP92_01980       CDS       T04519                                 
Name
(GenBank) ribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
hsz  Herbaspirillum seropedicae Z67
Brite
KEGG Orthology (KO) [BR:hsz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hsz03016]
    ACP92_01980
Enzymes [BR:hsz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     ACP92_01980
Transfer RNA biogenesis [BR:hsz03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    ACP92_01980
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: AKN64109
Position
433146..435200
AA seq 684 aa
MNLLFEESGDFKAGSIMTQQGESYQVEMASGKRAKVKARDALLQFATPAPQELLQQAQAI
AEEIDLDFLWEVAGEEEFGFTELATDYFGHAPLPPEAAGLLLRLHNAPIYFYKKGRGRYK
AAPQASLQAALAGLEKKKQQLLAQAAYVDELKAHKLPQAFAPIALQLLFKPDKNSIEFKA
LDAAAKEMQTTPQRLMLAAGGVASPKDLHYARFLFEHFPRGTGFPAIDIPAPPTDLPTAD
VQAFSIDDVTTTEIDDALSVTRLPDGKLRVGIHIAAPGLAIKRGDAIDAIARARMSTVYM
PGEKITMLPDELVAAYTLDAGAARPALSLYATLDATNWAVLATETRAELVPITANLRHND
LDELVTEEALAENRGEYPHKDEIALLWQWVQLLEQGRMAKRESFGLRPEQNNRVDFNFYV
EDDVVSIVRRRRGAPLDKIVAELMIFANSTWGKLMADHGVPGIYRAQGGGAGGWAAKMQV
RMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACIEHGVTAPLVAPFKPRDADLF
AIVSGFDAAYSGYADFQSTMERYWCLRWLAQENARVVDAVVLKDEILRLVDIPLVLRMPG
LPQLARGLQVKLDLLRWDEVDLTVEARLLEVPAAAAQAVDADLGEEDEDLLEGMAALGEE
EAPPPEEPAASLAADENPPAEAAQ
NT seq 2055 nt   +upstreamnt  +downstreamnt
atgaatttactgttcgaagaatccggcgatttcaaggccggctccatcatgacccagcag
ggcgagtcctaccaggtcgagatggcctccggcaagcgcgccaaggtcaaggcgcgcgac
gcactgctgcagttcgcgaccccggcgccgcaggaactgctgcaacaggcccaggccatc
gccgaggagatcgacctggacttcctctgggaagtggccggcgaggaagaattcggcttc
accgaactggctaccgactacttcggccatgccccgctgccgcccgaggcggccggcctg
ctgttgcgcctgcacaatgcgccgatctacttctacaagaagggccgcggccgctacaag
gccgccccgcaagcctcgctgcaggccgcgctggccggactggaaaagaagaagcagcaa
ctgctggcgcaagcggcctatgtggacgaactcaaggcccacaagctgccgcaggcgttt
gccccgatcgcgctgcaactgctgttcaagcccgacaagaacagcatcgaattcaaggcc
ctggacgccgccgccaaggaaatgcagaccacgccgcagcgcctgatgctggccgccggc
ggtgtcgcttcgcccaaggatctgcactatgcgcgcttcctgttcgagcatttcccccgt
ggcaccggtttccccgccatcgatattcctgcgccgcccacggacctgcccacggccgac
gtgcaggccttctccatcgacgacgtcaccaccaccgagatcgacgacgcgctgtcggtc
acgcgcctgcctgacggcaagctgcgcgtgggcatccacatcgccgccccgggcctggcc
atcaagcgcggcgacgccatcgatgcgattgcccgtgcgcgcatgtccaccgtctatatg
ccgggcgaaaagatcaccatgctgcctgacgagctggtggccgcctataccctggacgcc
ggcgcggcgcggccggccctctcgctctacgctacgctggacgccaccaactgggccgtg
ctggccaccgagacccgtgccgaactggtgccgatcacggccaacctgcgccacaacgat
ctcgacgagctggtcaccgaggaagcgctggccgagaatcgcggcgagtatccgcacaag
gatgagatcgcgctgctgtggcaatgggtgcaattgctggagcagggccgcatggccaag
cgcgagagcttcggcctgcggccggaacagaacaatcgcgtggacttcaacttctacgtc
gaggacgacgtggtcagcatcgtgcgccgccgtcgcggtgcgccgctggacaagatcgtg
gccgaactgatgatcttcgccaacagcacctggggcaagctcatggccgaccatggcgtg
cccggcatctaccgcgcccagggtggcggcgccggcggctgggccgccaagatgcaggtg
cgcatggtgacccacgccgcgccccaccagggcctgggggtggatcaatacgcctggagc
acctcgccgctgcggcgctacaccgacctggtcaaccagtggcagatcctggcctgcatc
gagcatggcgtgacggcgccgctggtggcgcccttcaagccgcgcgatgccgacctcttc
gccatcgtctccggcttcgacgccgcctattccggctatgccgacttccagtccaccatg
gaacgctactggtgcctgcgctggctggcccaggaaaacgcccgtgtggtcgacgccgtg
gtgttgaaggacgagatcctgcgcctggtcgatatccccctggtgttgcgcatgccgggc
ctgccgcagctggcgcgcggcctgcaggtcaagctggacctgctgcgctgggacgaggtc
gacctgaccgtggaggcgcgcctgctggaagtgccggccgccgctgcccaggccgtggac
gccgacctgggcgaggaggacgaagacctgctcgaagggatggcggcgctgggcgaggaa
gaggccccgccgccagaggagccggcggcgtcgctggcagccgatgagaacccgcccgct
gaagcggcccaatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (9)   

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