KEGG   Herbaspirillum seropedicae Z67: ACP92_19835
Entry
ACP92_19835       CDS       T04519                                 
Name
(GenBank) RNA polymerase subunit sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
hsz  Herbaspirillum seropedicae Z67
Pathway
hsz02020  Two-component system
hsz02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hsz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ACP92_19835
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    ACP92_19835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsz03021]
    ACP92_19835
Transcription machinery [BR:hsz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ACP92_19835
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38 HTH_IclR Xre-like-HTH
Other DBs
NCBI-ProteinID: AKN67279
Position
4553808..4555298
AA seq 496 aa
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILTDNPLLERLDDALDNSVRL
LADGAVSAAPSSGVSETTGSEASSEAAPAAADGESSFEYQDTAPEGVSGDSDWSFDDVAR
SGKSPDDEDARPQLEAHEITLREHLLEQIRVTARTQRDRALLELLTDALDDSGYLEEPLE
DILARLPEELGVDLEELSISLKLLQSLDPAGVGARSAGECLALQIRRLPKVPFVTRRLAL
KIVEDYLPLFAQRDFNKIKKALDCDDEDLREAQAVIRQCRPHPGAEFARDASDYVVPDVI
VKQTKNGWQVMLNHEVMPKLRVNAMYASALKQAKGEGSLSSQLQEAKWLIKNMRQRFDTI
LRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELK
YFFGSHVATETGGEASSTAIRALIKQLIGAENPQTPLSDSKIADMLAEQGMVVARRTVAK
YREVLKIPPVNLRKSL
NT seq 1491 nt   +upstreamnt  +downstreamnt
atgaaacagtcgctccagttacgtacctcgcagcatctcgcattgacgccgcaattgcag
cagtcgatcagactgctgcaactgtcgacgctggaattgcaccaggagctggagcagata
ctgaccgacaatcccctgctggaacgcctcgacgacgcgctcgacaattcggtgcgcctg
ctggccgatggcgccgtctcggcggccccctcgagcggcgtgagcgagaccaccggcagt
gaggccagcagcgaagccgctcccgcagcggccgatggcgaatccagtttcgagtaccag
gacaccgcccccgagggcgtgagcggcgactccgactggagcttcgacgatgtggcccgc
agcggcaagtcgcccgatgacgaagacgcccgcccccagctggaagcgcacgaaatcacc
ctgcgcgaacatctgctggaacagatccgcgtgacggcgcgcacgcagcgcgaccgcgcc
ctgctggaactgctcaccgatgcgctggacgacagcggctatctggaagagccgctggaa
gacatcctcgcgcgcctgcccgaagagttgggcgtggacctggaagaactctccatttcg
ctgaagctgctgcaaagcctggacccggcgggcgtgggtgcgcgcagcgctggcgaatgc
ctggccctgcagatccgccgcctgcccaaggtgcccttcgtcacgcgccggctggcgctg
aagatcgtggaagattacctgccgctgtttgcgcagcgcgacttcaacaagatcaagaag
gcgctcgattgcgatgacgaagacctgcgtgaagcgcaggccgtgatccgccagtgccgt
ccgcaccccggcgcggaattcgcgcgcgatgcctccgactatgtcgtgccggacgtgatt
gtcaaacagacaaagaacggctggcaggtcatgctcaaccatgaggtcatgcccaagctg
cgcgtcaacgccatgtacgccagcgcgctcaagcaggccaagggcgaaggatcgctatcc
tcgcagttgcaggaagccaagtggctcatcaagaacatgcggcaacgtttcgatacaatt
ttgcgcgtcgcgcaggccattgtggaacgtcaaagaaacttcttttcacatggggcagtc
gccatgcgcccccttgtgctacgtgaaattgctgatacactgggtctacacgagagcact
atctctcgcgtgacaactcagaaatacatgctcacaccgcatggcatgtttgagttgaag
tacttcttcggtagccacgtcgcaactgaaaccggaggcgaagcttcctccaccgcgata
cgggcgctgatcaaacagttgataggagccgaaaacccgcagaccccattatccgatagc
aagattgcggatatgctggcagaacaaggcatggtggtcgcgcgacgcacagtcgccaaa
taccgcgaagtgttgaagattccgccagtcaatctccgcaagtccctctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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