KEGG   Haloferax volcanii: HVO_0114
Entry
HVO_0114          CDS       T01200                                 
Symbol
ligT
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
hvo  Haloferax volcanii
Brite
KEGG Orthology (KO) [BR:hvo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hvo03016]
    HVO_0114 (ligT)
Enzymes [BR:hvo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     HVO_0114 (ligT)
Transfer RNA biogenesis [BR:hvo03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    HVO_0114 (ligT)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: ADE05007
UniProt: D4GYW0
Position
110198..110752
AA seq 184 aa
MRCFLAVDLPDSLAAGVAAVQDRLSDADGLRFTDPESAHVTLKFLGEVSPDRVGAVEDAV
ESAVEAAGVGPFDASVGGLGVFPSLDYIRVVWVGVDDGAAELTRLHEAIERETTALGFDP
EDHEFTPHVTLARMDDARGKVLVRRVVGGESPTVGSFRVREVRLKKSDLGPDGPEYETVA
RVSL
NT seq 555 nt   +upstreamnt  +downstreamnt
atgcgttgctttctcgccgtcgacctccccgactcgctcgcggcgggcgtcgccgcggta
caagaccggctctcggacgcggacgggcttcggttcaccgaccccgagagtgcgcacgtc
accctgaagttcctcggcgaggtgtcgccggaccgcgtcggagcggtggaggatgcggtc
gaatcagccgtcgaagccgcgggcgtcggccccttcgacgcctcggtcggcggactcggc
gtcttcccctcgctggactacattcgagtcgtttgggtcggcgtcgacgacggcgcggcc
gagttgacgcggctccacgaggccatcgagcgcgagacgacggcactcggcttcgacccc
gaagaccacgagttcacgccgcacgtcacgctcgcccgcatggacgacgcccgcgggaag
gtcctcgtgcggcgcgtcgtcgggggcgagtcaccgacggtcgggtcgtttcgcgtgcgc
gaggtacgcctgaagaagagcgacctcggccccgacggccccgagtacgagacggtggcg
cgggtctcgctgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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