KEGG   Hydrogenophaga sp. PBC: Q5W_03600
Entry
Q5W_03600         CDS       T04491                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
hyb  Hydrogenophaga sp. PBC
Pathway
hyb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hyb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Q5W_03600
  09124 Replication and repair
   03420 Nucleotide excision repair
    Q5W_03600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hyb03021]
    Q5W_03600
   03400 DNA repair and recombination proteins [BR:hyb03400]
    Q5W_03600
Enzymes [BR:hyb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     Q5W_03600
Transcription machinery [BR:hyb03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     Q5W_03600
DNA repair and recombination proteins [BR:hyb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     Q5W_03600
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD ResIII PaaX_C Baculo_LEF5_C
Other DBs
NCBI-ProteinID: AOS78131
Position
complement(733830..736106)
AA seq 758 aa
MSAEPVSEPLRVAVRRLCDFAARAGDLDHRFTPAPSAFEGIAGHASVAARRPAHYQRERT
LSGLCEGLLLQGRADGYDPQARRLDETKTHRGDPTLITPNRQALHWAQAQVYGWLLCEAE
NLDAIELALIYYDIDSGHETVLTRQGTRDSLRAFTQDLCTRYRDWAWQEAEHRRARDAAL
ATMPFPFEGYRAGQRELTEAVFRSQRAGRHLLAQAPTGIGKTVATLFGALRAMPVLGSDQ
LLVLTPKTTGRAIALDGLRRLNAQPMRVLERLAREKACEHPDKACHGESCPLAQGFYDRL
GGAREAAARVGWLDREALREIALAHRICPYYLAQEMQRWADVVVGDVNHWFDLNAQAWSL
AQAEGWRVQLLLDEAHNLAERARRMYSAELDPQRFGAWRAQAPKALKATMDSVHRAWGAL
APQAPEAAPDTPALDDALPAAFMATLGRHVATLTDFMARHPQAAVGLQPWLFEAVHFLRV
AERFGAHSVVERSPGPPARRGNPRPRLALRCLLPAELLTPRWAGAHAATLFSATLAPMAH
AQRLLGLPEPVARLEVDSPFDPAQWSVRVARGLSTRWADRVRTLPRLVDELGAHYRAHPG
NHLAFFSSFDYLTQAMEAFRAAHPDVTVWSQSRSMDEAAREAFIARFVEGGQGMGFAVLG
GVFGEGIDLPGSRLVGVSIATLGLPPPDALSEALRERLQHTGAQGWADTYLYPGLHKVVQ
AAGRLIRTPQDRGTLLLLDERFASPEVRALLPPWWGVR
NT seq 2277 nt   +upstreamnt  +downstreamnt
gtgtccgccgaacccgtctccgagcccctgcgcgtcgccgtgcgacgcctgtgcgacttc
gccgcgcgcgcgggcgacctggaccaccgcttcacgcccgcgcccagcgccttcgaaggc
atcgcggggcacgccagcgtggccgcgcgccgccccgcgcactaccagcgcgaacgcacg
ctctcgggcctgtgcgaaggcctgctgctgcaaggccgcgccgacggctacgacccccag
gcccgccgtctcgacgaaaccaagacgcaccgcggcgacccgacgctcatcacgcccaac
cgccaggccctgcactgggcgcaggcgcaggtgtacggctggttgctgtgcgaagccgag
aacctcgacgcgatcgaactcgcgctcatctactacgacatcgacagcggccacgagacg
gtgctcacgcgccagggcacgcgcgactcgctgcgggctttcacccaggacctgtgcacg
cgctaccgagactgggcctggcaggaagccgaacaccgccgcgcgcgcgacgccgcgctg
gccaccatgcccttccctttcgaaggctatcgcgcgggccagcgcgaactcaccgaggcc
gtgttccgttcgcagcgcgcgggccgtcacctgctcgcgcaggcgcccaccggcatcggc
aagacggtggccacgctgttcggcgcgctgcgcgccatgccggtgctgggcagcgaccag
ttgctggtgctcacgcccaagaccacgggccgcgccatcgcgctcgacggcctgcgccgg
ctgaacgcacagccgatgcgcgtgctggagcgcctggcgcgcgaaaaggcctgcgagcac
cccgacaaggcctgccacggcgagtcctgcccgctggcgcagggcttctacgaccgcctg
ggcggcgcgcgcgaagccgccgcgcgtgtcggttggctggaccgcgaggccctgcgcgag
atcgcgctcgcgcaccgcatctgcccctactacctggcgcaggagatgcagcgctgggcc
gacgtggtggtgggcgacgtgaaccactggttcgacctgaacgcgcaagcctggtccctc
gcgcaggccgagggctggcgcgtgcaactgctgctggacgaggcccacaacctggccgag
cgcgcgcgccgcatgtacagcgccgagctggacccgcagcgcttcggcgcctggcgcgcg
caggcgccgaaggccttgaaggccaccatggattcggtgcaccgcgcctggggcgcgctg
gcgccacaggcacctgaagcagcgcccgacacccccgcgctcgacgacgccctgcccgcc
gccttcatggccacgctgggccgccacgtcgccacgctcaccgacttcatggcgcgccat
ccgcaggccgccgtgggcctgcagccctggctgttcgaggcggtgcactttctgcgtgtg
gccgagcgtttcggcgcgcactcggtggtggagcgctcgcccggcccgcccgcgcgccgc
ggcaacccgcgcccgcgcctcgcgctgcgctgcctgctgccggccgaactgctcacgccg
cgctgggccggcgcgcacgcggccacgctgttctcggccacgctcgcgcccatggcgcac
gcgcagcgcctgctgggcctgcctgagccggtggcgcgcctcgaggtggactcgcccttc
gacccggcgcagtggtcggtgcgcgtggcgcgcggcctgtccacgcgctgggccgaccgc
gtgcgcaccctgccgcgcctggtggacgagctcggcgcgcactaccgggcgcacccgggc
aaccacctcgcctttttcagcagcttcgactacctcacgcaagccatggaggcgttccgc
gccgcgcacccggacgtgaccgtgtggtcgcagtcgcgcagcatggacgaggccgcgcgc
gaggctttcatcgcgcgcttcgtggagggcggccagggcatgggcttcgcggtgctgggc
ggcgtgttcggcgaaggcatcgacctgcccggatcgcgcctggtgggcgtgagcatcgcc
accctgggcctgccaccacccgacgcgctgagcgaggccctgcgcgaacgcttgcagcac
accggcgcacagggctgggccgacacctacctctaccccggcctgcacaaggtggtgcag
gccgccggccgcctgatccgcacgccgcaggaccggggcaccctgctgctgctcgacgag
cgcttcgccagccccgaggtgcgcgcgctgctgccgccctggtggggcgtgcgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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