KEGG   Hymenobacter sp. DG25B: PK28_00875
Entry
PK28_00875        CDS       T03500                                 
Name
(GenBank) methionine synthase
  KO
K00548  5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
Organism
hyd  Hymenobacter sp. DG25B
Pathway
hyd00270  Cysteine and methionine metabolism
hyd00450  Selenocompound metabolism
hyd00670  One carbon pool by folate
hyd01100  Metabolic pathways
hyd01110  Biosynthesis of secondary metabolites
hyd01230  Biosynthesis of amino acids
hyd04980  Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:hyd00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00270 Cysteine and methionine metabolism
    PK28_00875
  09106 Metabolism of other amino acids
   00450 Selenocompound metabolism
    PK28_00875
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    PK28_00875
 09150 Organismal Systems
  09154 Digestive system
   04980 Cobalamin transport and metabolism
    PK28_00875
Enzymes [BR:hyd01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.13  methionine synthase
     PK28_00875
SSDB
Motif
Pfam: Met_synt_B12 S-methyl_trans Pterin_bind B12-binding_2 B12-binding CdhD
Other DBs
NCBI-ProteinID: AIZ62595
UniProt: A0A0A7LH73
Position
189908..193627
AA seq 1239 aa
MPTTTSPLHDILRQRLLILDGAMGTMIQRHKLEEADFRGTRFADHPKPLRGNNDLLSLTR
PDIIRGIHADYFAAGADMVETNTFSGTTIAQADYGLEHIVYELNYESARIAREVADEFTA
QNPAKPRFVAGAVGPTNRTASLSPDVNRPGFRAVTFDELATAYLEQVRGLVEGGSDALLI
ETIFDTLNAKAALYAVQKFFDEGGKVVPVMISGTITDASGRTLSGQTVEAFWNSIRHLPL
LSVGLNCALGAHQLKQYVQELSRIADVHISAYPNAGLPNAFGGYDESAQEFAAVVEDYLQ
DNLLTVVGGCCGTTPQHIAELSKLAEKYQPRPLPAVPALTRLSGLEPFGINENSLFVNVG
ERCNVTGSRAFARLIRTGNYEAALQVARDQVEGGAQVLDVNMDEGMLDSEQAMTTFLHLI
ASEPDIARVPIMIDSSKWSVLEAGLKCVQGKSIVNSISLKEGEEVFKAHARTVRQYGAAV
VVMAFDENGQADTLEKRIEICKRCYDILVNEVGFPAEDIIFDPNILTVGTGMEEHRNYAL
DFIEAVRWIKANLPGVLTSGGVSNISFSFRGNDVVREAMHSSFLYHAIQAGLDMGIVNPS
QLAVYDEVPQDLLELVEDVLLNRRPDATERLVDFADNIKDKSTNSQQPSANSQEWRSLPV
AERLQHALIKGITEFIDQDTEEVRQQVTRPLEVIEGPLMAGMNVVGDMFGAGKMFLPQVV
KSARVMKKAVAYLEPYLLADKQSGDRQTAGKILLATVKGDVHDIGKNIVGVVLACNNFDI
VDLGVMVPLEKILDEAVKQQVDVIGLSGLITPSLDEMVYVAQEMEKRGLKTPLLIGGATT
SRLHVAVKIAPNYSGPVVHVNDASRSVGVAAALLGSADVEYARTVREDYRQLREDYAGRQ
REKNYLPIEAARENGFKADWETTPITKPSFLGTKVLEDYPLAELATYIDWTPFFHTWELK
GRYPRILEDENLGEAATRLFEDAQALLQKIIDEKLLTARAVLGFWPANTQGHDTIQVFTD
ETREQVQTEFFTLRQQSEKAPGIPSLAFSDFVAPRETGREDYIGGFAVTAGLGIEKLLDQ
FEKDHDDYSSIMVKALADRLAEAFAERLHQRVREEFWGYAPAEHLSNEDLIQEKYQGVRP
APGYPGCPDHTEKITLFELLDAENKTGIRLTENLAMYPASSVSGFYYAHPNSRYFGLGRI
GQDQVEDIARRKNMPLPELERWLAPNLNYDPVSVPVTAL
NT seq 3720 nt   +upstreamnt  +downstreamnt
atgccgacgaccacctcgcccctgcacgatattctgcgccagcgcctcctgattctggat
ggggccatgggcaccatgattcagcgccataagctggaagaagctgatttccggggcacc
cgcttcgccgaccatcccaagcccctgcgcggtaacaacgacctgctcagcctcacccgc
cccgacatcatccggggcattcacgccgactacttcgcggccggggccgacatggtggaa
accaacaccttcagcggtaccaccattgcccaggccgattatgggctggagcacattgtg
tatgagctgaactacgagtcggcgcgcattgctcgggaagtggccgatgagtttacggcg
caaaaccccgccaagccccgctttgtagccggcgccgtgggccccaccaatcgcaccgcc
tccctctcccccgacgtcaaccgcccgggcttccgggccgtgacgtttgacgagctggcc
accgcctacctggagcaggtgcgcgggctggtagaaggcggctccgatgccctgctcatt
gaaaccatcttcgataccctgaacgccaaagcagccctgtacgccgtgcagaagttcttt
gatgaaggcgggaaagtggtgcccgtcatgatttccggcaccattaccgatgcttccggc
cgcacgctctcggggcagacggtagaggctttctggaactctattcgccacttgccgctg
ctgagcgtgggtttgaactgcgccctgggcgcgcatcagctcaagcaatacgtgcaggag
ctcagccgcattgctgatgtgcacatttcggcctaccccaacgccggtttgcccaatgcc
tttggcggctatgatgagtcggcgcaggagtttgcggccgtggtggaagactacctccag
gacaacctgctgacggtggtgggcggctgctgcggcaccacaccccagcacattgccgag
ctcagcaagctggccgagaaataccagccccgccccctgcccgccgtgccggccctaacc
cgcctgagcggtttggagcccttcggcatcaacgaaaacagcctgtttgtgaacgtaggc
gagcggtgcaacgtgacgggtagccgtgcttttgcccgccttatccgcaccggcaattac
gaggcggccctgcaggtagcccgcgaccaggtggaaggcggcgcgcaggtcttggacgtg
aacatggacgaaggcatgctggactcggagcaggccatgaccaccttcctgcacctgatt
gcctccgagcccgacattgcccgcgtgcccatcatgattgactcctccaaatggagcgtg
ctggaagccggcctcaagtgcgtgcagggcaagagcatcgtcaactccatttccctgaaa
gagggcgaggaagtattcaaagcccatgcccgcaccgtgcgccagtacggcgctgccgtg
gtggttatggcttttgatgaaaacggccaggccgataccctggaaaagcgcatcgaaatc
tgtaagcgctgctacgatattctggtaaacgaagtgggtttcccggccgaggacatcatc
ttcgaccccaacatcctgacggtgggcaccggcatggaagagcaccgcaactacgccctg
gatttcattgaggccgtgcgctggattaaagccaacctgcccggtgtgctcaccagcggc
ggcgtgagcaacatcagcttctcgttccgcggcaacgacgtggtgcgcgaggccatgcac
tcctccttcctctaccacgccattcaggccgggctggacatgggcattgtaaaccccagc
cagttggccgtgtatgatgaagtgccccaggatttgctggagctggtggaagacgtgctg
ctcaaccgccgccccgatgccaccgagcgcctcgtggacttcgccgacaacatcaaggat
aaatcaaccaacagccaacagccatcagccaacagccaggaatggcgcagcctgcccgtg
gccgagcgcctgcagcacgcgctgataaaaggtattacagagtttattgaccaggacacc
gaggaagtgcgccagcaggtaacccgcccgttggaagtaattgaaggcccgctgatggcc
ggtatgaatgtggtgggcgacatgttcggggccggcaaaatgttcctgccgcaggtggtg
aaatcggcccgggtgatgaagaaggccgtggcctacctagaaccctacctgctggccgac
aaacaaagcggcgaccggcaaaccgccggcaaaatcctgctggccaccgtgaagggcgac
gtgcacgacatcggcaaaaacattgtgggcgtggtgctggcctgcaacaactttgatatc
gtggacctgggcgtgatggtgccgctggaaaagattctggacgaagccgtgaagcagcag
gtcgatgttattggcctgagcggcctcatcacccccagcctggatgaaatggtgtacgtg
gcccaggaaatggaaaagcgcggcctgaaaaccccgctgctcattggcggagccaccacc
tcccgcctgcacgtagccgtgaaaattgcgcctaactactccggcccggtggtgcacgta
aacgatgcctcccgcagcgtgggcgtagccgccgcgctgttgggctcggctgatgtggaa
tacgcccgcaccgtgcgcgaggactaccgtcagttgcgcgaggattacgctggccgccag
cgcgagaaaaactacctacctattgaagcggcccgggaaaacggctttaaggctgattgg
gaaaccacacccattacgaagccttctttcctcggcaccaaagtgctggaagattacccg
ctggccgagctggccacctacatcgactggacgcccttcttccacacctgggagctgaaa
ggccgctacccgcgcattctggaagacgaaaacctgggcgaagcggccactaggctgttt
gaggatgcgcaggccttactccaaaaaatcatcgacgaaaagctgctcacggcccgcgcc
gtgctgggcttctggcccgctaatacccaaggccacgacaccattcaggtgttcaccgat
gaaacccgggagcaggtgcagacggagttctttaccctgcgccagcagagcgaaaaagcc
cccggcattccttccctggctttctccgatttcgtggcgccccgggaaaccggccgtgag
gactatattggtgggtttgcggttacggcgggcctgggcattgagaagctgctggaccaa
ttcgaaaaggaccacgacgactactccagcattatggtgaaagcccttgccgaccgcctc
gccgaggcgtttgccgagcgcctgcaccagcgcgtgcgggaggagttctggggctatgcg
cccgccgagcatctctccaatgaagacctcattcaggagaaataccagggcgtgcggccc
gcgcccggctaccccggctgccccgaccacaccgagaaaattaccctgtttgagctactc
gacgcggaaaacaaaacgggcatccgcctcaccgaaaacctggccatgtacccggcttcc
tccgtcagtggtttctactacgcgcaccccaactcccgctactttggcctgggccgcatt
ggccaagaccaagtggaagatattgcccggcgcaagaacatgccgctgccggagctggag
cgctggctggcgcccaacctgaattatgacccggtttccgtgcctgtaacggcgctgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (8)   
   KEGG PATHWAY (7)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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