KEGG   Hymenobacter sp. DG25B: PK28_02730
Entry
PK28_02730        CDS       T03500                                 
Name
(GenBank) RNA polymerase sigma54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
hyd  Hymenobacter sp. DG25B
Pathway
hyd02020  Two-component system
hyd02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hyd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PK28_02730
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    PK28_02730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hyd03021]
    PK28_02730
Transcription machinery [BR:hyd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PK28_02730
SSDB
Motif
Pfam: Sigma54_CBD Sigma54_DBD Sigma54_AID HTH_12 SF3b1 Thioredoxin_4
Other DBs
NCBI-ProteinID: AIZ62870
UniProt: A0A0A7LI10
Position
complement(627641..629224)
AA seq 527 aa
MQRLDMKQLLQQKLSPQQIQFIKLLQIPTAELEARIKEELEANPALEEGDDEPEEEFEEQ
DRDEDAEDFDNDPDAEFDSDNSTLDEDFDEPADEQPEIELPVAEEAAPEERQNDNDDLDL
GDYLNDDEIAGYKMQGDGPGEPEDDREMPLADTSGSLIDSLLNQLGFTDLDEKQEAIGRQ
LIGSIDGDGYIRRDLSAIVNDLAFSQNIETTTEEIEQVLHLIQSFDPPGIAARDLQECLL
LQLERRHQDDPVVEHAERILTDTYDEFTKKHYTRIQQKLDLEDDELKDAIALILKLNPKP
GGTGPVGLGKVQYIIPDFILTNDNGQLSLTLNARNAPELRVSPAYQEMFQTYDKAAKKDT
KMKEAVTFVKQKLDSAKWFIDAIRQRQNTLLKTMDAIVRYQREFFLEGDEGKLRPMILKD
IAQEISMDISTVSRVANSKAVQTEFGIYPLKYFFSEGIATDSGEDASSREVKHILKEIIE
GESKGKPLSDDKLEKMLNARGYNIARRTVAKYREQLNIPVARLRKEL
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgcaacgactggacatgaaacagcttctccagcagaagctgtccccccaacagatacaa
ttcattaagctgctgcagattcctactgctgagctggaagcccgcatcaaagaagagctg
gaggccaacccggccttggaagaaggcgacgacgagcccgaggaggagtttgaggagcag
gaccgcgacgaagacgccgaggatttcgacaacgaccccgatgccgagttcgatagcgac
aacagcacgctggatgaggattttgacgagcccgccgacgagcagcccgaaatagagctg
cccgtagccgaagaagctgcgcccgaggaacgccagaacgacaatgacgatctggacctg
ggcgactatctcaacgacgacgaaatagccggctacaaaatgcagggcgacggccccgga
gagccggaagacgaccgggaaatgcccctggccgataccagcggctccctcatcgactcc
ctgctgaaccagctgggttttactgatttagacgaaaagcaggaagccattggccgccag
cttatcggctctattgatggcgacggctacatccgccgcgacctgtcggccatcgtcaac
gacctggccttctcccagaacatcgaaaccaccaccgaggaaatagagcaggtgctgcac
ctgattcagagcttcgacccgcccggcattgccgcccgcgacctgcaggagtgcctgttg
ctgcagctggagcgccgccaccaggacgacccggtagtagagcacgccgagcggattctg
accgatacttacgacgagtttaccaagaagcactacacccgcattcagcaaaagctggat
ctggaagatgacgagctgaaggacgccattgccctgattctgaagctgaaccccaagccc
ggcggcaccggcccggtaggcctgggcaaggtgcagtacatcatccccgacttcattctg
accaacgacaacggccagctgagcctgaccctgaacgcccgcaacgcgcccgagctgcgc
gtgtcgccggcctaccaggagatgttccagacatatgacaaggccgccaagaaagacacc
aagatgaaggaggccgtcaccttcgtgaagcagaagctggactcggccaagtggtttatt
gatgccattcggcagcgccaaaacacgctcctgaagaccatggacgccattgtgcgctac
cagcgcgagttcttcctggaaggtgacgaaggcaagctgcggcccatgattctgaaggac
attgcccaggaaatcagcatggacatcagcaccgtgagccgcgtggccaactccaaagcc
gtgcagacggagttcggcatttatccgctgaagtatttcttctccgaaggcattgccacc
gactccggcgaggacgccagctcccgcgaggtgaagcacattctgaaggaaataattgaa
ggcgaaagcaaaggcaagccgttatccgacgacaagctggaaaagatgctgaacgcgcgg
ggctacaacattgcccggcgcaccgtggccaagtaccgggagcagctgaacataccggtg
gcgcgtctgcgcaaagaactctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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