KEGG   Hymenobacter sp. DG25B: PK28_15025
Entry
PK28_15025        CDS       T03500                                 
Name
(GenBank) ATP-dependent DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
hyd  Hymenobacter sp. DG25B
Pathway
hyd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hyd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    PK28_15025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hyd03400]
    PK28_15025
Enzymes [BR:hyd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PK28_15025
DNA repair and recombination proteins [BR:hyd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     PK28_15025
    RecFOR pathway proteins
     PK28_15025
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 TIP49 AAA_16 AAA_3 AAA_22 Mg_chelatase Bac_DnaA nSTAND3 NB-ARC AAA_14 AAA_PrkA Rad17 RNA_helicase AAA_33 NTPase_1 AAA_18 DUF815 bpMoxR TsaE AAA_24 NACHT Sigma54_activ_2 ABC_tran Torsin
Other DBs
NCBI-ProteinID: AIZ64654
UniProt: A0A0A7LN44
Position
complement(3500662..3501708)
AA seq 348 aa
MRESYLTGGADNMDATEKDIDKALRPLSFADFAGQDKVVENLKVFVGAAKQRGEALDHVL
LHGPPGLGKTTLSHIISNELGSGIKMTSGPVLDKPSDLAGLLTNLEPHDVLFIDEIHRLN
PVVEEYLYSAMEDYRIDIMLDSGPNARSVQISLSPFTLIGATTRSGLLTSPLRARFGINS
RLEYYDAKLLTSIVQRSAEILNTPIHEDAAYEIARRSRGTPRIANNLLRRTRDFAQMKGD
GTITQAIAHFALGALDVDARGLDDMDKRILLTIIDKFKGGPVGLSTIATACGDEAETIEE
VYEPFLIQEGYIKRTPRGREATEAAYQHLGRTMPQHLRGNTATGELFS
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgcgtgaatcttatctgaccggtggcgccgacaatatggacgccaccgaaaaagacatt
gataaagccctgcggcccttaagctttgctgactttgcgggccaggataaagtggtggaa
aacctgaaggtattcgtgggcgcagctaagcagcgcggtgaggccctcgaccacgtgctg
ctgcacggccctcccggcctgggcaaaaccaccctctcgcacattatctccaacgagctg
ggctccggcattaaaatgaccagcggccccgtgctggacaagccctccgacctggccggc
ctgctcaccaacctggagccgcacgatgtgctgttcatcgacgaaattcaccgcctgaac
cccgtggtggaagagtacctgtactcggctatggaggactaccgcatcgacatcatgctc
gattcgggcccgaatgcgcgctccgtgcagatttcgttgtcaccgttcacgctcatcggg
gctaccacccgttccggtctgcttacctcgccgctgcgggcgcgctttggtatcaactcc
cgcctggagtactacgatgccaaactgctcaccagcattgtgcagcgctccgccgaaatc
ctgaatacgcccattcatgaggatgcggcctacgaaattgcgcgccgctcgcgcggtacg
ccgcgtattgccaacaacctgctgcgccgtacccgcgacttcgcccagatgaaaggcgac
ggcaccatcacgcaggccattgcccacttcgccctcggcgcgctggacgtagacgcccgc
ggcctcgatgatatggacaagcgtatcctgctcaccatcatcgacaagttcaagggtggc
cccgtgggcctgagcaccattgccaccgcctgcggcgacgaagccgaaaccattgaggaa
gtgtacgagccattcctcatccaggaaggctacatcaagcgcaccccccgcggccgcgaa
gccactgaggccgcttaccaacacctgggccgcaccatgccgcagcatttgcgtgggaat
acggccacgggggagttgtttagttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (38)   

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