KEGG   Hymenobacter sp. DG25A: AM218_12085
Entry
AM218_12085       CDS       T04064                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
hye  Hymenobacter sp. DG25A
Pathway
hye03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hye00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AM218_12085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hye03019]
    AM218_12085
Enzymes [BR:hye01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AM218_12085
Messenger RNA biogenesis [BR:hye03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AM218_12085
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Flavi_DEAD Helicase_RecD
Other DBs
NCBI-ProteinID: ALD21806
UniProt: A0A0M4HLE6
Position
2815877..2817301
AA seq 474 aa
MSDSPQPAAFADFKLNKQLLTAVAEAGFEHPTPVQEQTIPLLLAGHDVLAIAQTGTGKTA
AFGLPLLMKVKYAQGVNPRALILAPTRELAMQLESHLRKMAVHTDLRIFAIYGGLGPKTQ
IETIAKGVDILIATPGRLMELYLKGNLVLKEIKTLVLDEADKMMDMGFMPQIRRILEVIP
SKRQNVLFSATMPDKVSVLSEEFLEFPVRVEVTPAATSAQNVTQSLYEVPNLLTKINLLE
YLFLDWDAFHRVMIFTRTKEHAENVASFLKRKSHGEVRAIHGNKGQNVRINAMEAFKAGE
IRFLVATDVAARGIDVPQVSHVINFDVPLIYDDYVHRIGRTGRAQHTGAAITFANEAEMH
HMARIEELINQKIPLLPLPPEVKVMETQFDEQQGMDREIDERRRRDDPSFLGAFHERKEY
VKPGVTIDKRTGKTYKEGPNRSQKGNKANPSKKTASKPAVKAAKAAMARAKRRK
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgtctgattcgccccagccggcagcgtttgccgatttcaagctcaacaagcaattgctc
acggccgtagccgaagcgggctttgagcaccctacgcccgtgcaggagcaaaccattccg
ctgctgctggcgggccacgacgtgctagccattgcccagaccggcaccggcaaaaccgcc
gctttcggcctgccgctgctcatgaaggtgaaatacgcgcaaggcgtaaacccaagggcc
ctgattctggcccctacccgcgagctggccatgcagctggaaagccacctacgcaagatg
gccgtgcacaccgacctgcgcattttcgccatttacggtggactaggccccaaaacccag
attgaaaccattgccaagggcgtagacattctgattgccacgcccggccgcctcatggag
ctgtacctgaaaggcaacctggtgctgaaggagattaaaaccctggtgctggatgaggcc
gacaaaatgatggatatgggctttatgccccagatccgccgcattctggaggtaattcca
agcaagcgccagaatgtgctgttctctgccaccatgccggataaagtatcggtgctcagc
gaggaattcctggaatttccggtgcgggtggaagtaacgccggccgccacctcagcccag
aacgtgacccagtccttgtatgaggtgcccaacctgcttaccaagattaacctgctggaa
tacctgttcctggattgggatgccttccaccgggtcatgattttcacccgcactaaggag
cacgccgaaaacgtggccagcttcctgaagcgcaagtcccacggcgaggtgcgcgccatt
cacggcaacaagggtcagaatgtgcgcatcaacgccatggaagcctttaaagccggggaa
atccgctttttggtggctaccgatgtagccgcccgcggcatcgacgtgccccaggtaagc
cacgtcattaacttcgacgtgccgttgatatatgatgattacgtgcaccgcattggtcgc
acgggccgcgcccagcatacgggtgccgccatcaccttcgccaacgaagccgaaatgcac
cacatggcccgcattgaggagctcatcaaccagaaaattccgctgctgccgctgccgccg
gaggtaaaggtgatggaaacccagttcgacgagcagcagggcatggaccgggagattgat
gagcgccgccgccgcgacgacccatccttcctgggtgctttccatgagcgcaaggaatat
gtaaagcccggcgtaaccattgacaagcgcaccggcaaaacctataaggaagggcctaac
cgcagccaaaagggcaacaaagccaatccttctaaaaagactgcctccaagccggccgtg
aaagccgccaaagccgccatggcccgggccaagcgtcggaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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