KEGG   Hymenobacter sp. APR13: N008_08190
Entry
N008_08190        CDS       T03213                                 
Name
(GenBank) hypothetical protein
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hym  Hymenobacter sp. APR13
Pathway
hym03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hym00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    N008_08190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hym03019]
    N008_08190
   03016 Transfer RNA biogenesis [BR:hym03016]
    N008_08190
Enzymes [BR:hym01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     N008_08190
Messenger RNA biogenesis [BR:hym03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     N008_08190
Transfer RNA biogenesis [BR:hym03016]
 Prokaryotic type
  tRNA degradation factors
   N008_08190
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 Cdc6_C
Other DBs
NCBI-ProteinID: AII51957
UniProt: A0A076HTI0
Position
complement(1918450..1920948)
AA seq 832 aa
MKRKDDSAAPRANRAKAAPGSPDAALISQDLVFRIFRDNPEKVLAYRQISRRLGVTTREQ
RDEVFSHLKALKKAGLLTLVQNDEYRLTDPANAPAAVDAGSGRSSRKNEAVPARRSARSP
EAEFGQDPVVHRRREAGFDFPDAASTTDSRRRHASHADTIVGTVALATDKFAFVISEESE
SDVRVFTDRLRFAMQGDTVRLRLRGSRDGRPVGDVVEVLKRVRPEVVGRLQVRGGIGFVK
PDNRKMYFDVFVPFENLHGAVDGEKVLVRVTEFPEDDAGRSPLGEVVRSFGQAGANEAEI
NAIMAEFGLPFEFPAEVEEESESISEIIPASEVERRRDFRHITTFTIDPADAKDFDDALS
IQKLDNGHWEIGVHIADVTHYVRPGTALEEEAKHRATSVYLVDRVIPMLPERLSNGLCSL
RPNEDKLTFSAVFELDENGKLYESWFGKTIIHSDRRFAYEDAQERIEGLESDYTAEVQLM
NSIAKKLCAQRFKQGAISFETQEVKFKLDENGKPLGVYVKERKDAHKMIEEFMLLANRKV
AEFVFKLKARKPRFTMVYRVHEAPDPDRLQTFALFAKKFGHHLDLANPKKISTELNDLSM
EVMGRPEQNVLQTLAVRTMSKAIYTTEPLGHFGLAFEHYSHFTSPIRRYPDMMAHRLLEH
YLEGGKNVDVEPVEEECKHSSEREKVAASAERASIKYKQVEFMSEVIGETFTGVVSGLTE
RGMYVEIEENKCEGMVRLSEIPGDHFELDRDNYRIVGQRTKRIIQFGDELQVIVKSANLL
DRTIDFELVDNRPDAVKQRELQERRENSKPRGYRPERSSGGRPGGDKGKRRR
NT seq 2499 nt   +upstreamnt  +downstreamnt
atgaaaagaaaagacgactccgccgccccccgcgccaaccgcgcgaaggcagcccccggc
agccctgatgctgccctcatttcccaggacctggtcttccgcatcttccgcgacaacccc
gagaaggtgctggcctaccgccagatttcccgccgcctgggcgtcaccacccgcgagcag
cgcgacgaagtattcagccacctcaaggcgctgaagaaagccggcctgctgacgctggtg
cagaacgacgaataccgcctcaccgacccagccaacgcgcccgccgctgtggacgcgggc
agtggccgcagctcgcgcaaaaacgaggcggtccccgcccgccgcagtgcccgctcgccc
gaggccgagttcggccaggaccccgtggtgcaccgccgccgcgaggccggcttcgacttc
cctgacgcagccagcaccaccgattcgcgccgccgccacgcctcccacgccgacaccatt
gtgggcaccgtggcgctggccaccgacaagtttgccttcgtgatttccgaggaaagtgaa
agcgacgtgcgcgtgttcacggaccgcctgcgctttgccatgcagggcgacacggtgcgc
ctgcgcctgcgcggctcccgcgacggccgccccgtcggcgacgtggtggaagtgctcaag
cgggtgcgccccgaggtggtgggccgcctgcaggtgcgcggcggcatcggcttcgtgaag
cccgacaaccgcaagatgtacttcgacgtgttcgtgcccttcgagaacctgcacggcgcc
gtggatggcgagaaggtgctggtgcgcgtcacggagtttccggaggatgacgctggccgc
tcgccgctgggcgaggtggtgcgcagcttcggccaggccggcgccaatgaggccgagata
aacgccatcatggctgagttcggcttgccgtttgaattcccggccgaagtggaggaggag
tcggagtcgatttccgaaatcatcccggcttcggaagtggagcgccgccgcgacttccgc
cacatcaccaccttcaccatcgaccccgccgacgccaaggacttcgacgatgccctgagc
attcagaagctcgacaacggccactgggaaatcggcgtgcacatcgccgacgtgacccac
tacgtgcgccccggcacggcgctggaagaggaagccaagcaccgcgccacctcggtgtac
ctcgtcgaccgcgtgattccgatgctgccggagcgcctctccaacggcctctgctcgctg
cgccccaacgaggacaaactgactttctcggccgtgtttgagctcgacgaaaacggcaag
ctctacgagtcgtggttcggcaaaaccatcattcactccgaccgccgcttcgcttacgaa
gatgcccaggaacgcatcgaaggactggagtcggactacacggccgaggtgcagctcatg
aacagcatcgccaagaagctgtgcgcgcaacgcttcaagcagggcgccatcagcttcgag
acgcaggaagtgaagttcaagctcgacgagaacggcaagccgctgggcgtgtatgtgaag
gagcgcaaggacgcgcacaagatgatcgaggagttcatgctgctggccaaccgcaaggtg
gccgagttcgtgttcaagctcaaggcccgcaagccgcgcttcacgatggtgtaccgcgtg
cacgaagcccccgacccggaccgcctgcagaccttcgcgctgttcgccaagaaatttggc
caccacctcgacctggccaaccccaaaaagatcagcaccgagcttaacgacctttcgatg
gaggtgatgggccggcccgagcagaacgtgctgcagaccctggctgtgcgcaccatgagc
aaggccatctataccaccgagccgctgggccactttggcctggccttcgagcactactcg
cacttcacctcgcccatccgtcgctaccccgacatgatggcccaccgcctgctggagcac
tacctggagggcggcaagaacgtggacgtggagcctgtggaagaagagtgcaagcactcc
tcagagcgcgagaaagtggcggcctccgccgagcgcgccagcatcaagtacaagcaggtg
gagttcatgtccgaggttatcggcgagacgttcaccggcgtggtgtcgggcctcacggag
cgcggcatgtacgtggaaatcgaggagaacaagtgcgaaggcatggtgcgcctgagcgag
attcccggcgaccatttcgagctggaccgcgacaactaccgcatcgtgggccagcgcacc
aagcgcattatccagttcggcgacgagctgcaggttatcgtgaaatcggccaacctgctc
gaccgcaccatcgacttcgagctggtggacaaccgccccgacgccgtgaagcagcgcgag
ctgcaggagcgtcgcgagaacagcaagccccgcggctaccgccccgagcgcagcagcggc
ggccggcccggcggcgacaaaggcaagcgccgccggtag

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