KEGG   Hydrogenimonas sp. MAG: NNO_0719
Entry
NNO_0719          CDS       T05789                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hyo  Hydrogenimonas sp. MAG
Pathway
hyo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hyo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NNO_0719
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hyo03019]
    NNO_0719
   03016 Transfer RNA biogenesis [BR:hyo03016]
    NNO_0719
Enzymes [BR:hyo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NNO_0719
Messenger RNA biogenesis [BR:hyo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NNO_0719
Transfer RNA biogenesis [BR:hyo03016]
 Prokaryotic type
  tRNA degradation factors
   NNO_0719
SSDB
Motif
Pfam: RNB CSD2 OB_RNB
Other DBs
NCBI-ProteinID: BBG65422
UniProt: A0A3G9HA62
Position
complement(694929..696875)
AA seq 648 aa
MRAFLTRIAKGAYRSDIEKEFIPLLDELIREHIVKVSGETVKLDAKYRAGTIDLLPSGTA
FVEMIGAKGRDLLVEPENLHGAKNGDYVIVRRLFGKAGRPSAKVVKVVQPAFVYAVGYIK
RTESGLEPFHIKTDLPMELKSPIVELEEGTLFQVDNRTSKITQILGSLKDPKVDEKISLA
IFNKQELFSEEAEAEARSWGDEVDASDYPERTDLRHLPFCTIDPVDAKDFDDAIFWDEKR
GVLYVAIADVSSYVTEDSAIDKEARRRGFSIYFPHKSIPMLPRALSENICSLKPDVDRLA
YVCRMELDTESLEVKRHSFFEAVIRSRRRYNYDEIDRYLESGLQSAAEGDRETLSFIFPL
KDLTDRLREKRLKKGYDFRSTEVRMELDENRNLLSTRIEESTPSHRLIEDCMLLANRAAA
EHFDYGIFRVHEPPTPERIEKLVDELGKIGIYVEESTQDFHALVLALQEEARRMDVEPYV
DQLIIQTQKQAAYSAENVGHFGLGFERYTHFTSPIRRYSDLTLHRLLKAILMGDEERREY
LLRNIEPLCIKISELEREATRVEWDFMARKYARWAESHKDLILHAVVVEAAQIPAATTDL
PIVGMRLFCDKSDLLLFDRIEAKVNIVHIPQAKIFVLVERTEHLLEER
NT seq 1947 nt   +upstreamnt  +downstreamnt
atgagggcatttctcaccagaattgcgaaaggagcctacagaagcgacatagagaaggag
ttcattccgcttctggatgagctgatccgcgaacatatcgtcaaagtcagcggagaaacc
gtaaaactggacgccaagtaccgtgccggaaccatagaccttcttccatccggtacggca
tttgtagagatgataggcgcaaaaggaagagacctcctcgtagagcctgagaatcttcac
ggcgccaaaaacggcgactacgtcatagtccgccgtctcttcggaaaagcgggcagacct
tcggcaaaagtggtgaaggtggtacagccggcattcgtttacgccgtcggctacataaag
cggaccgaatcgggcctggagccttttcacataaaaacagacctccctatggagcttaaa
agccccatcgtagagctcgaagagggtactctcttccaggtcgacaaccgaacatcgaaa
atcacccaaatcctgggctctctgaaagatccgaaagtggacgagaagatttcgctggcc
atcttcaacaagcaggagctcttcagcgaagaggctgaggctgaggcgaggagctgggga
gatgaggtagacgcttcggactatccggagcgtaccgacctgaggcacctgcccttctgt
acgatagacccggtagacgcaaaggatttcgacgatgcgatattctgggatgagaaaagg
ggagtcctatatgtcgctatcgccgatgtgagcagctatgtaacggaagacagcgcaata
gacaaagaggcgagaagaagaggcttttcgatctattttccgcacaagtcgataccgatg
ctgccgagagccctgagcgaaaacatatgctctttgaaaccggatgtagaccggctggcg
tatgtatgccgcatggagctcgacaccgaaagtctcgaagtgaaaaggcacagcttcttc
gaggcggtcatccgatccagacggcgctacaactacgacgagatagacagatacctcgag
agtggtctgcaaagcgctgcagaaggtgacagggagaccctctccttcattttcccgctc
aaagatctcaccgaccggctgagagagaagcgcctcaaaaaggggtacgacttccgctcc
accgaagtgcggatggagctggatgaaaaccggaatcttctctcgacacgtatcgaggag
tctaccccgtcgcaccggctcatcgaagattgtatgctgctggccaacagagcggccgcc
gaacacttcgattacggaatcttcagagttcatgagccgcccacaccggagcgcatagag
aagctggtagacgagctcggaaagataggaatctacgtagaggagagtacgcaggatttc
catgcccttgtactggctctgcaggaagaggcccgcaggatggatgtggagccctatgtg
gaccagctgataatccagacgcagaaacaggccgcctacagtgccgaaaatgtcggccat
ttcggtctgggtttcgagcgctatacacacttcacctccccaatccgccgctactccgac
cttactctccaccggctgctcaaagcgattctcatgggtgacgaggagagaagagagtat
ctgctcagaaacatagagccgctctgcataaagataagtgaactggagcgcgaagcgaca
cgggtggagtgggatttcatggcacgaaaatatgcgagatgggcggagtctcacaaagat
cttatactccatgcagtcgtagtcgaagcggcacagattcctgcggctacaaccgacctt
ccgatagtgggaatgcgtctcttctgcgacaaaagcgaccttctgctgttcgacagaata
gaagcgaaagtcaacatagtgcatattccgcaggcgaagatatttgtgctcgtcgaacga
accgaacatctgctcgaggagaggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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