KEGG   Hydrogenimonas sp. MAG: NNO_1841
Entry
NNO_1841          CDS       T05789                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
hyo  Hydrogenimonas sp. MAG
Pathway
hyo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hyo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NNO_1841
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hyo03021]
    NNO_1841
   03019 Messenger RNA biogenesis [BR:hyo03019]
    NNO_1841
Transcription machinery [BR:hyo03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     NNO_1841
Messenger RNA biogenesis [BR:hyo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     NNO_1841
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 Spore_III_AA AAA_22 Mor AAA_25
Other DBs
NCBI-ProteinID: BBG66544
UniProt: A0A3G9H4R6
Position
1870312..1871631
AA seq 439 aa
MSETSTRSNSNGKSRTHIPVEGYKIEDLRQKSLEELVSIAKELGVEHPNELKRQDLMFEI
LKSQVSKGGYILFTGILEITNEGYGFLRAMDANFSNSSNDAYVSSTQIRKFALRNGDVVT
GQVRPPKEQERYYALLKIEAINYMPVAESKNRPLFDNLTPLYPQEKLKLEYNPTKLTGRV
LDLFTPIGKGQRGLIVAPPRSGKTELMKELAHGITYNHPEVELIVLLVDERPEEVTDMER
SVKGEVYSSTFDLPAQNHVRVAELVIEKAKRRVEMGKDVVILLDSITRLARAYNTVTPSS
GKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALVDTGSRMDEVIFEEFKGTGNS
EIVLSRNIADRRIYPAIDIIKSGTRKEELLTDPNTLPKIWALRNAMHQMDEVEALKFLYS
KMLKTKNNEEFLSIMNEGA
NT seq 1320 nt   +upstreamnt  +downstreamnt
atgagcgaaacctctacccgcagcaacagtaacggaaagtcgagaacccacattccggtc
gaaggatacaagatagaagatctgaggcagaagagtctcgaagagcttgtctctatcgcc
aaagagctgggcgtggagcatccgaacgagctcaagcgtcaggatctgatgttcgaaatt
ctcaaatcgcaggtgagcaagggcggctacatactgtttacaggcattctggaaatcacc
aacgaggggtatggattccttcgcgccatggacgccaacttctccaactccagcaacgac
gcctacgtctccagcacgcagattcgcaaatttgccctgagaaacggggatgtcgtgaca
gggcaggtccgccctccgaaggagcaggagcgctactacgctctgctgaagatcgaagcg
atcaactacatgccggtcgccgaaagcaaaaaccgacccctcttcgacaacctcaccccg
ctctacccgcaggagaagctgaagctggagtacaaccccacaaaactcaccggccgggtt
ctggacctgttcacaccgataggaaaggggcagagggggctcattgtggctccgcccaga
tcgggaaagacggagctcatgaaggagctggcccacggcatcacctacaaccacccggaa
gtggagctcatcgtactgctggtcgacgaacgccccgaagaggttaccgatatggagcgc
agcgtcaagggagaggtctacagctccaccttcgaccttcccgcgcaaaaccatgtgcgt
gtcgccgagctcgttatagagaaggctaaacgccgtgtagagatggggaaagatgtcgtg
atacttctcgactcgataacacgtcttgcacgcgcctacaacacggtcacgccaagcagc
gggaaagtgctctcgggcggtgtcgacgcgaacgcgctccataagcccaagcgcttcttc
ggagccgccaggaacatcgaaaacggcggcagcctcaccatcatagccaccgcactcgta
gataccggaagccgaatggacgaggtgatcttcgaagagttcaaaggtacgggcaacagt
gaaatcgtactcagcagaaacatcgcggacaggcgaatctaccccgcaatagacatcata
aagtccggtacgagaaaagaggagctgcttacagaccccaacacccttcccaaaatctgg
gccctgcgcaacgcgatgcaccagatggacgaagtggaggcgctcaagttcctctactcc
aaaatgctcaagacaaaaaacaacgaagagtttttgagcatcatgaacgaaggcgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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