KEGG   Candidatus Ishikawaella capsulata: ICMP_297
Entry
ICMP_297          CDS       T04149                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
icp  Candidatus Ishikawaella capsulata
Pathway
icp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:icp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ICMP_297 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:icp03019]
    ICMP_297 (deaD)
   03009 Ribosome biogenesis [BR:icp03009]
    ICMP_297 (deaD)
Enzymes [BR:icp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ICMP_297 (deaD)
Messenger RNA biogenesis [BR:icp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ICMP_297 (deaD)
Ribosome biogenesis [BR:icp03009]
 Prokaryotic type
  rRNA helicases
   ICMP_297 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22
Other DBs
NCBI-ProteinID: BAH83152
UniProt: C5WCU6
Position
338129..339817
AA seq 562 aa
MSNIKTSFADFGLNKNILSALKDMGYEKPSPIQLACIPYLLEGNDVLGMAQTGSGKTAAF
FLPLLNNIDLKLESPQILVLAPTRELAVQVTGACNDFAKHMRGVNVLALYGGQRYDIQLK
GLRQGPQIVVGTPGRLLDHLKRGTLNLSQLRCLVLDEADEMLRMGFIEDVETIMSNIPSK
RQTVLFSATMPEEIRRITRRFMKEPHDIRIQSNITTRPNISQYYWYAYSCKKAALLSFLE
AEDFDAAIVFVRTKNMTLELAEFLYLNGYKCAALNGDMNQIVREKTLERFKNGNLDILIA
TDVAARGLDVERISLVINYDIPLDVESYIHRIGRTGRAGRAGRALLFVERRERRLLYNIE
RSIKSNIKEVRLPNTEFLSERRQEKFVELVQHELLSKDIEQYNILLKKISEKKQIAIEAL
ATALLKMAQGKRPLIVPPDKPIHHHKHQLSHDKKANYKNIERRKKSGAMACRKEMELYRI
DVGRHDGVEIRHIVGIIANEVGIKSSYIGNIKLFDSHAIIELPKNIPIDIFKNCARTRIL
NKPMNIKLLKNKNTYQNNSRRR
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgagtaatataaaaacttcttttgctgattttgggctcaataaaaatatactttctgct
ctaaaagatatgggttatgagaaaccttcgcctattcaacttgcttgtattccatatcta
ttagaaggtaatgatgtcctcggtatggctcaaacaggtagtggcaaaacagcggcattt
tttctaccattattaaataatattgatctaaaattagaatcacctcaaatattagtatta
gctccaacacgagaattagctgttcaggtaacaggagcatgtaatgattttgctaaacat
atgcgaggtgttaatgtattggctctttatggtggacaacgatatgacatacagttaaaa
ggtttacgtcaaggtccacaaattgtagtcggtaccccaggacgtttacttgatcatctt
aagcgaggtaccttaaatctttctcagttaagatgtttagttttagatgaagcggatgaa
atgttaagaatgggatttattgaagatgttgaaacaattatgtccaatattccctctaaa
cgtcaaactgttttattttctgctacgatgccagaagaaattaggcgaattacccgaaga
tttatgaaagaaccacatgatatccgcatccaatcaaatataactactaggccaaatatt
agtcaatattattggtacgcctatagttgcaaaaaagcagcattattgagcttcttagaa
gctgaagattttgatgccgctattgtttttgtgcgtacgaaaaatatgacattagaatta
gcagaatttttatatcttaacggttataaatgtgctgccctaaatggggatatgaatcaa
atcgttcgggaaaaaactttagaacgttttaaaaatggtaatttagatattttaattgca
acagatgttgcagcacgtggtttggatgtagaaagaattagtttagtaatcaattatgat
attccactagatgtagaatcatatatacatcgtattggtcgtactggacgtgcgggaaga
gcgggtagagccctattatttgtagaaagaagggagcgtcgtttactatataatattgaa
cgttctattaaatctaatattaaagaagtgaggcttcctaatacggagttccttagtgaa
cgccgacaagaaaaatttgtggaactagtacaacatgaacttttaagtaaagatatagaa
cagtataatatattattaaaaaaaatttctgaaaaaaaacaaattgctatagaagcatta
gcaactgcattattaaagatggctcaaggaaaacgtccattgattgtacctccagataaa
ccaatacaccatcataagcatcaacttagtcatgataaaaaagcaaattataaaaatatt
gaaaggcgaaaaaaaagtggtgcaatggcttgtcgtaaagaaatggaactttatcggata
gatgtaggacgacatgatggtgtagaaatacgtcatatagtaggtattattgctaatgaa
gtaggtattaagagttcttatataggaaatattaaattatttgattcacatgcaatcatt
gaacttcctaaaaacatcccaatagatatatttaaaaattgcgctcgtacacgaatttta
aataaaccaatgaatataaaattacttaagaataaaaatacttatcaaaataattcacgt
cgccgataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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