KEGG T05226: CWC33

Idiomarina sp. X4: CWC33_01315

Entry

CWC33_01315       CDS       T05226

Symbol

topA

Name

(GenBank) type I DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

idi Idiomarina sp. X4

Brite

KEGG Orthology (KO) [BR:idi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:idi03032]
    CWC33_01315 (topA)
   03400 DNA repair and recombination proteins [BR:idi03400]
    CWC33_01315 (topA)
Enzymes [BR:idi01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CWC33_01315 (topA)
DNA replication proteins [BR:idi03032]
Prokaryotic type
  DNA Topoisomerases
   CWC33_01315 (topA)
DNA repair and recombination proteins [BR:idi03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CWC33_01315 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_2 Toprim_4 zf-TFIIB

Other DBs

NCBI-ProteinID:

ATZ72419

Position

complement(248899..251514)

AA seq 871 aa
MAKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTRATETVKSKPAAEVRKMSPEA
KAKYQKERDYKRLIARMGIDPENNWEAHYEVLQGKEKVVKELKQLAKKSDEIILATDLDR
EGEAIAWHLRELIGGEDDRFKRVVFNEITKNAIQEAFKHPAQLNTDRVNAQQTRRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWDVYADLASTANDKL
RMQVVKESGKNFRPVNEKETNKALNLLKGADYEITSREDKPTSSKPGAPFITSTLQQAAS
TRLGFGVKKTMMLAQRLYEAGHITYMRTDSTNLSSEAVSACRDLIENEFGKKYLPESANR
YGAKSNAQEAHEAIRPSDVKIKASSLSSMDRDAQRLYELIWRQFVACQMTPAKYDSTTLI
ATAGDFELKARGRVMRFPGWTKVMPPSSKKDGDTNLPDLKKGDSLSLEQLEPEQHFTKPP
ARYSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFFAEKMGEIVNDRLIENF
TELMNYNFTAEMEQALDDIAAGKRQWKETLDSFYEDFKQRLEKAELDPAEGGMRENSVVM
TDIDCPECGRKMGIRTASTGVFLGCSGYNLPPKERCTKTINLTPGEEAIEVTDEEERETE
ALRAKKRCPKCGTAMDSYLIDEKRKLHVCGNNPTCDGQLLEQGKFRIKGYDGPTIECDKC
GSEMQLKNGRFGKYFGCTNSECKNTRKLLRNGEPAPPKEDPVPLPELPCEDSDAYFVLRD
GASGIFLSANTFPKSRETRAVTVKELARFKDRLPKKFLYLADAPQEDDDGNDAIVRFSRK
NKEQYVVTEVNKKQTGWKAFYRDGKWTVDAK

NT seq 2616 nt +upstreamnt +downstreamnt
atggctaaatcgctcgtcattgtcgagtctccggcaaaagccaaaaccattaataagtac
ttaggtaaggactttgtggttaagtccagtgttggtcacgtgcgtgatctgccaacacgt
gcgactgaaacggtaaaaagtaagccggcagcagaagttcgcaaaatgtcgcctgaagct
aaagcgaagtatcaaaaagagcgtgactataaacgcttaatcgctcgtatgggtattgat
cctgaaaacaactgggaagcccattacgaagtacttcagggaaaagagaaagtcgttaaa
gaactcaaacagctggcgaaaaagtcagatgaaattattctcgcaacggatttggaccgc
gaaggggaggcaatagcctggcacttgcgggaattaattggtggcgaggacgaccgcttt
aagcgtgtggtatttaacgaaattaccaaaaatgccattcaggaagcatttaaacacccg
gcacaattaaacacggaccgtgttaatgctcagcaaacgcgacgctttttagatcgtgtg
gtaggtttcatggtgtcgccgctcttgtggaaaaaggttgcaagaggtttgtctgccgga
cgagtacagtcagtcgctgtacgcttggtagtcgagcgcgagcgcgaaattaaagctttt
gtaccggaagaatactgggatgtttatgccgacttggccagcacggcgaacgacaagctt
cgcatgcaggtggtgaaagagtcaggtaagaacttccgcccggtcaacgaaaaagaaacc
aataaagccttaaatttattgaaaggcgcagactacgagataacttctcgtgaagataag
ccgacttccagcaaacctggtgcgccttttattacgtcgaccctgcaacaggcggcgagt
actcgcttaggttttggtgttaagaaaacgatgatgcttgcacagcgtctttatgaggcg
ggacacatcacttatatgcgtaccgactcaacgaatttgagttcagaagcggttagcgcc
tgtcgtgatctcattgaaaatgaattcggtaaaaagtacttaccagagtcagcgaatcgt
tatggcgcaaaaagtaatgctcaggaagcgcacgaggcgatacgtccatccgatgtaaaa
ataaaggcgtcctcactgtcgtcaatggatagggacgcacagcgtctgtacgagctcatt
tggcgtcaattcgttgcgtgtcaaatgacaccggcgaaatacgatagcacgactttaatc
gcgactgccggcgactttgaattgaaggcgcgcggtcgagtaatgcgttttccgggttgg
acgaaagtcatgcctccgtcgtcgaaaaaagacggagatactaacttaccagacttgaag
aaaggcgactcattgtcactcgaacagttagagcctgagcagcattttactaagcctccg
gctcgctacagtgaagcttccctggttaaagaactagagaaacgcggtattggccgacca
tcgacgtatgcgtcaattatttcaaccattcaggatcgtggctatgtgcgtgttgaaagc
cgtcgtttctttgccgagaagatgggagaaatcgtcaatgatcggctgattgaaaatttc
accgagttaatgaattacaactttacggctgaaatggaacaggcgcttgatgacattgct
gccggaaaacgccaatggaaagagacgctggacagcttctatgaggacttcaaacagcgc
cttgaaaaagcggagctggatccagctgaaggtggtatgcgtgagaacagcgttgtcatg
accgatattgactgtccggagtgcggccgcaaaatgggcattcgtacggcatcaaccggt
gttttccttggctgctccggttataacctgccgccgaaagaacgctgtactaagacaata
aacctgacacccggcgaagaagcgatagaagttaccgacgaagaggagcgcgaaactgaa
gccttacgcgccaagaaacgctgtccaaaatgcggtacagcaatggacagctatttaatt
gacgaaaaacgtaagttgcatgtatgcggtaacaacccaacgtgtgatggccagttgctt
gagcagggtaagttcagaattaaaggctatgacggcccgacaattgagtgtgacaagtgc
ggttcggaaatgcagttgaaaaacgggcgttttggtaagtacttcggttgtaccaatagt
gagtgtaagaatactcgtaagttgcttcgaaatggtgagcctgcgccaccaaaagaggat
ccagtaccgttaccggaattaccgtgtgaggattcggacgcctactttgtgctgcgtgac
ggcgcttctggtatctttttatcagcaaatacttttccgaaatctcgagaaacgcgagcg
gttacggtaaaagagttggcccgttttaaagatcgtctaccgaaaaagtttctgtacctg
gctgacgctccgcaggaagacgacgacggtaacgacgctattgttcgattctcgcggaaa
aataaagagcagtacgtggtaacagaagtgaataaaaaacaaacgggttggaaagccttt
taccgtgacggtaaatggactgttgacgctaagtag

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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