KEGG T05226: CWC33

Idiomarina sp. X4: CWC33_11480

Entry

CWC33_11480       CDS       T05226

Name

(GenBank) exodeoxyribonuclease I

K01141

exodeoxyribonuclease I [EC:3.1.11.1]

Organism

idi Idiomarina sp. X4

Pathway

idi03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:idi00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    CWC33_11480
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:idi03400]
    CWC33_11480
Enzymes [BR:idi01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     CWC33_11480
DNA repair and recombination proteins [BR:idi03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     CWC33_11480
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CWC33_11480
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CWC33_11480

SSDB

Motif

Pfam:

Exonuc_X-T_C RNase_T Acyltransf_C

Other DBs

NCBI-ProteinID:

ATZ74281

Position

complement(2369523..2370962)

AA seq 479 aa
MAQNEQETFYWHDYETWGANPLVDRPAQFAGLRTDTDFNVVGRPLTLYVQPTPDFLPNPE
ATLVTGITPQLALKQGVSEAAFSKAIAEEFQKPNTTIIGYNNIRFDDEVTRSLFYRNFYD
PYEYSWQNGNSRWDLIDVTRACFALRPEGINWPDNEDGQPSLKLEHLSVANNIEHGQAHD
AMSDVYATIGLAKLIKEKQPKLWQWAYSIRRKQKLLSLFNWQAPEPLAHVSGFYGTVNRY
LSAILPLGFHPKQNSNIIAWDLRIDPALFAERSVEELIELTYTSRKELEAQGQQKSGIQN
IHLGRNPFLAPIKTISDDASEKAELDMNTVAKNAQWLQENSEFRDKLMQVFEQTKAFAPR
TDVDHQIYDGFFSPQDKKHMEIIRTSEPQQLAGLDLAFEDSRMEKLLLRYRARNYPSTLT
DKELNQWRQFCQQRLIDPPEGMLSADAFALRLEELANQHQEDAHKLRLLKSLYDYAASL

NT seq 1440 nt +upstreamnt +downstreamnt
atggcacaaaacgaacaagagactttttactggcacgattacgagacttggggagccaac
ccgttagttgaccgcccggcgcaatttgccgggcttcgcaccgacactgactttaatgtg
gtcgggcgcccgttaacactgtatgtgcaacctacgccagattttctgcctaaccctgag
gcgacgttagtgaccggcataacaccacagttggcactaaaacaaggggtcagtgaggct
gcgttcagcaaagccattgccgaagagtttcaaaagcccaacaccaccattattggttac
aacaatattcggtttgatgacgaagtaacccgctccctgttttatcgcaatttctatgac
ccttatgaatacagctggcaaaatggcaattcccgatgggatttaattgatgtcacccga
gcctgttttgcactgcggcctgaaggtattaactggccagacaatgaggacggtcaacct
agcctgaaactcgagcacttaagtgtcgctaataacattgagcatggccaggcgcacgat
gcaatgtccgatgtctatgcgaccattgggctggctaaactcattaaagaaaagcagcca
aaattatggcagtgggcctacagcattcggcgtaagcaaaagctgctaagcttattcaac
tggcaagcgcctgagcctttagcgcatgtcagtggcttttatggcaccgtaaaccgatat
ttatccgctatcttgccccttgggtttcacccaaagcagaacagtaacattattgcctgg
gatctacgcattgaccccgccctatttgcggaaagatcagtcgaagaactgattgaactg
acttacaccagccgaaaagagctggaagcccaaggtcaacagaaaagtggcattcagaat
attcatttaggtcgcaacccgtttcttgcccccatcaaaacaatttctgatgatgcttca
gagaaagccgaactggacatgaacacggtagctaagaatgcgcaatggttacaagaaaac
agtgaattcagagacaagctgatgcaggtgttcgaacaaacgaaagcgttcgcaccgaga
accgatgttgaccaccaaatttacgacggctttttctcaccgcaagacaaaaaacacatg
gagattattaggacgtctgagccacaacagctggccgggttagatttggcttttgaagac
tctcgcatggagaagttattgctacggtaccgggcccgtaactatccttcaactttaaca
gacaaggaactgaatcagtggcgtcaattctgtcagcaacgtctcattgacccgccggaa
gggatgctctctgcagacgcttttgcgttgcgcctcgaggagttggctaatcagcatcag
gaagacgcgcacaaactgcgccttttaaagtcactgtatgactacgccgcctcgctctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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