KEGG   Iodobacter fluviatilis: C1H71_09675
Entry
C1H71_09675       CDS       T06803                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
ifl  Iodobacter fluviatilis
Pathway
ifl02020  Two-component system
ifl02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ifl00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C1H71_09675
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    C1H71_09675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ifl03021]
    C1H71_09675
Transcription machinery [BR:ifl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C1H71_09675
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38 GGA_N-GAT HTH_IclR
Other DBs
NCBI-ProteinID: QBC43790
UniProt: A0A7G3G8J7
Position
2130479..2131855
AA seq 458 aa
MKQTLQLRLSQQLNLTPQLQQAIKLLQLSTLEFQQELEQYLNDNPLLERGEEAPAGEAEQ
PEPQWEMGGDDDGLRWEGTSHGSSDDDNDFDPATNIARDLDLREYLLQQAGLLQLPHRDK
SLLLMLIEALDDDGFLSQPLDEVYSQLPEELIQDYELELDDLKIALIRLQHLEPLGVGAR
DTADSLCLQLRQKQPSAAKDLALKIAQNSLDLLAGRDYTKLKRAFKCEDAELKAAQELIV
SLNPRPSAQWSVTSPRYVSPDVVVQKVRGVWRVRLHDASMPKLRVNRLYADILQKGDGAH
LARELQEARWLVKSVQQRFDTILRVATAIVERQRAFFEYGEVAMRPLVLRDIAEELDLHE
STISRVTTQKYMLTPRGLYEFKYFFGSHVDTDAGGECSATAIKALIKQMVQQEDKKKPLS
DSVLAEALSAQGIVVARRTVAKYREALQIYPVSQRKSL
NT seq 1377 nt   +upstreamnt  +downstreamnt
atgaaacaaaccctgcagctgcggctttcccagcaacttaacctcacgccacaattgcag
caggctattaagctgctgcagctttctacgcttgagtttcaacaagagcttgaacagtat
ctaaacgacaaccccttgctggagcgtggcgaggaggcccccgcaggggaagctgagcag
cccgagccgcagtgggaaatgggcggggatgatgatggtttgcgctgggaaggtactagt
catggaagctcagatgacgataatgacttcgaccccgccaccaatattgcgcgtgattta
gatttacgtgaatacctgctgcagcaagcaggtctgctgcagctgccgcatcgggataag
tctttgttgttgatgttgattgaagctttggatgatgatggttttctttctcagccctta
gatgaagtctattctcagctgccagaggaacttatccaagattatgaactcgaacttgat
gacttgaagattgctttaattcgcttacaacatttagagcccttaggcgttggagctcgg
gataccgccgattcattatgcttacagttgcgtcaaaaacagccgagtgccgctaaagat
ttagccttgaaaattgcccaaaattcactcgatttattagctggacgggactacactaag
cttaaacgagcctttaaatgcgaggatgctgagttaaaagctgcgcaagaattgattgta
agtttaaacccaaggccgagtgcacagtggtctgtaacctcaccaagatatgtaagccct
gatgtggttgtgcaaaaagtacgcggggtttggcgggttagattacacgatgcatctatg
ccaaaattacgcgttaaccggctttatgcagatatcttacaaaaaggcgatggtgctcat
ttagcgcgcgagttacaagaagcgcgttggttggtaaaaagtgtgcagcagcgttttgat
acgattttacgagtagcaacagcaattgtagagcggcagcgggcattttttgagtacggt
gaagtggcgatgcgccctttggtgttgagggatatcgctgaagagctcgatttacacgaa
tcaactatttctagagtcaccacgcaaaaatacatgttaacgccgcgtggtttgtatgag
tttaagtacttttttggtagccatgtagatacggacgccggtggtgaatgttctgcaacc
gctatcaaagctttgataaagcagatggtgcagcaagaagataagaaaaaacctttaagt
gatagcgtattggcagaagcattatccgcccaaggtattgtggtagcgcgtcgtaccgtt
gctaaataccgtgaggcgttgcagatttacccagtaagtcagcgcaaaagtttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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