KEGG   Idiomarina loihiensis L2TR: IL1354
Entry
IL1354            CDS       T00218                                 
Symbol
himD
Name
(GenBank) Bacterial nucleoid DNA-binding protein, IHF beta subunit
  KO
K05788  integration host factor subunit beta
Organism
ilo  Idiomarina loihiensis L2TR
Brite
KEGG Orthology (KO) [BR:ilo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ilo03032]
    IL1354 (himD)
   03036 Chromosome and associated proteins [BR:ilo03036]
    IL1354 (himD)
   03400 DNA repair and recombination proteins [BR:ilo03400]
    IL1354 (himD)
DNA replication proteins [BR:ilo03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    IL1354 (himD)
Chromosome and associated proteins [BR:ilo03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    IL1354 (himD)
DNA repair and recombination proteins [BR:ilo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      IL1354 (himD)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_1 HU-CCDC81_bac_2 HU-CCDC81_euk_2 PqqD SWIRM-assoc_3
Other DBs
NCBI-ProteinID: AAV82194
UniProt: Q5QZ46
Position
complement(1453479..1453760)
AA seq 93 aa
MTKSELIERLTLKHELPPKQVEASVKEILEQMVQSLSQGKRVEIRGFGSFSLHYRAPRVG
RNPKTGDPVELDGKYVPHFKAGKELRERVDTLS
NT seq 282 nt   +upstreamnt  +downstreamnt
atgactaaatcagagctgattgaaaggttaactttgaagcacgagttacctcctaagcag
gttgaagcttcggtaaaagaaatactcgaacagatggtgcaatccttatcgcaaggtaag
cgcgttgaaattcggggctttggaagcttctctttgcattatcgggctcctcgtgttggc
cgtaatcctaaaacaggtgatcctgttgaattggatggaaaatatgtaccgcattttaaa
gcgggcaaagagcttcgcgagagggtcgatacattaagttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

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