KEGG   Ipomoea nil (Japanese morning glory): 109182214
Entry
109182214         CDS       T04663                                 
Name
(RefSeq) sm-like protein LSM36B
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03018  RNA degradation
ini03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109182214
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109182214
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ini03019]
    109182214
   03041 Spliceosome [BR:ini03041]
    109182214
Messenger RNA biogenesis [BR:ini03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109182214
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109182214
Spliceosome [BR:ini03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109182214
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 109182214
NCBI-ProteinID: XP_019187867
Position
Un
AA seq 93 aa
MSGAAAGERGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY
VNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA
NT seq 282 nt   +upstreamnt  +downstreamnt
atgagtggagctgcagcaggagagagaggctcaacaaccactaaaactccagctgatttt
ctaaaatctatccgtggacgtcctgtggttgtgaaattgaactcgggtgttgattatcga
ggcattttagcgtgtttagatggatacatgaatattgcaatggagcaaacagaagagtat
gttaatggacaactgaagaacaagtatggggatgccttcatacgaggaaacaatgtactc
tacatcagcacatcgaagaggacattggctgagggggcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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