KEGG   Ipomoea nil (Japanese morning glory): 109187252
Entry
109187252         CDS       T04663                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
  KO
K03131  transcription initiation factor TFIID subunit 6
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109187252
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ini03021]
    109187252
   03036 Chromosome and associated proteins [BR:ini03036]
    109187252
Transcription machinery [BR:ini03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109187252
   Coactivators
    SAGA/TFTC/STAGA complex
     109187252
Chromosome and associated proteins [BR:ini03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     109187252
    STAGA complex
     109187252
    TFTC complex
     109187252
    SAGA complex
     109187252
    SLIK complex
     109187252
SSDB
Motif
Pfam: TAF6_C TAF Histone TFIID-31kDa CBFD_NFYB_HMF LRR_9
Other DBs
NCBI-GeneID: 109187252
NCBI-ProteinID: XP_019192962
Position
Un
AA seq 538 aa
MSVVPGETIEVIAQSIGISNLLPEVLPALATDVEYRLREIMQESIKCMRHSKRTTLTAED
VDAALSVRNVEPVYGFASGDPLRFSRAAGHKDLFYIEEKDLDFKDVIEAPLPKAPLDTVL
TAHWLAIEGVQPAIPENPPLEALVAPPDNKKTECKDDGGPIDLKLPVKHVLSRELQLYYD
KITDLVVNKSNSVLFKEAIVSLATDCGLHPLVPYFTYFISDEVSRNLNNFPLLCSLMRLV
WSLLQNSHIHIEPYLHQLMPSVMTCLVAKRLGNKVLDSHWELRDFAAKLVALVCKRYGNV
YHNLQPRVTKTLLHAFLDPTKALPQHYGAIQGLAAIGPSVVSLLLMPNLESYMRLLEPEM
QLDKQKNEMKRHEAWRVYGALMCAAGLCIYDQLKTLPTLLSPPAYAALKSKRKVLTSVSS
NKRKISTDNMIQQQPPQKKLVTDGAAGGMQGATSGYPTNLGATDGGFASTPQALSSENSQ
RISSRKEMSGGQAPKSQVGLNQAWKQDIDAAHLLPFLFEYYGESMLSFVPAPELLVFL
NT seq 1617 nt   +upstreamnt  +downstreamnt
atgagtgtagttccgggagagacaatagaagtgatagcgcagagcatcggaatcagcaat
ttgttgccggaagtcttaccggccctagccaccgatgtcgaataccgtctccgagaaata
atgcaggagtccataaaatgcatgcgtcattcgaagaggacaacgttaactgccgaggat
gtcgatgcagcacttagcgtacggaatgttgagccggtatatggattcgcctctggagat
cctttgcggttcagcagagctgccgggcataaggatttgttctacattgaagaaaaggat
ttagattttaaggatgtgatcgaagctccactaccgaaagctcctttagatactgttctt
acggctcattggttagctattgaaggagtgcaacctgctattcctgaaaatcctcctctt
gaagctcttgtagcacctccagataataaaaagaccgagtgtaaagatgatggaggtcca
attgacctcaaattacctgtaaagcatgtcctgtcccgtgagcttcagctatactatgac
aaaattacggatctggtggtgaataagtcgaactctgtgcttttcaaagaagcaatagtt
agtttggcaacagattgtggactccatcccttagttccttacttcacatacttcatttca
gatgaggtctcaaggaacttgaataactttcctcttttgtgttctttgatgaggcttgtt
tggagcctgcttcagaattctcacatacacattgaaccatatctgcaccagttgatgcca
tctgtaatgacatgtcttgttgcaaagagattggggaataaggttttggacagccactgg
gagcttagagactttgctgccaagttggttgccctggtatgtaagaggtacggtaatgtt
taccacaatctccaaccacgtgttacaaagactttgttgcatgcttttctggatccaaca
aaggcactgcctcaacattatggtgcaatccaagggctagcggcaattggacctagtgtg
gttagcctgcttttgatgcccaatcttgagtcttacatgcgattgctggagcccgaaatg
caactagacaagcaaaagaacgagatgaagaggcatgaagcatggcgagtgtatggtgcc
ttaatgtgtgcagctggcctatgcatctacgatcagctaaagacacttccaacactgtta
tctccaccagcatatgctgctttgaagtccaagaggaaagtccttacttcagtatcatca
aataaacgaaaaattagcacggacaacatgatacaacaacaacccccacaaaagaaactg
gtgactgacggggcagctggagggatgcaaggagctactagtggataccctacaaaccta
ggggctactgatggaggttttgcatcaacgccacaagctttgtcaagtgagaattcgcaa
agaatcagcagcagaaaggagatgagtggtggacaagcccctaaatcacaagttggtctt
aatcaggcctggaagcaagatatagatgctgcgcatttgctacctttcctatttgaatac
tatggtgaaagtatgctgtcctttgtacctgcacctgagttgttggtcttcctgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (23)   

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