KEGG   Ipomoea nil (Japanese morning glory): 109189770
Entry
109189770         CDS       T04663                                 
Name
(RefSeq) 20S-pre-rRNA D-site endonuclease nob1
  KO
K11883  RNA-binding protein NOB1
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    109189770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ini03009]
    109189770
   03051 Proteasome [BR:ini03051]
    109189770
Ribosome biogenesis [BR:ini03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    109189770
Proteasome [BR:ini03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    109189770
SSDB
Motif
Pfam: PIN_6 NOB1_Zn_bind
Other DBs
NCBI-GeneID: 109189770
NCBI-ProteinID: XP_019195934
Position
Un
AA seq 619 aa
MEVQPTSQPPPQCWSNIVKQQLPPPPQQNHQSPFAAAAPPPPNRELVGSCNSTKGIAVAV
VDANAIIQGGQNLSHNADRFVSVPEVLSEIRDPTSRHSLHFLPFTVDTMEPSPDALKRVI
NFARATGDLQTLSDVDLKLIALTYMLESQIHGTEHLRDCPPPIHTVNVRRLPEKDMPGWG
SNVPNLEEWEALEHAVEGGSNTTSRILPLKDLSMNVVPTDQQSIDGSTVNDSKSQSEDQE
DADCGFRGPRKYMSQKKEVKIEGKKMVADGVDASQGQYDDDAGDWLPAVSRSTHRKYLRR
KGRRELHGTPSESKHVGGTEDLDILQDKASTDITDGNSAESGIIKENGNEDISKILSEMR
LEEESSVALQASENCASETLESNDFKSSDTADNINGDVENVEDDVDNLNEMASQTCESIE
TSQMDDSSSEQSWMLRSLSESTVACITSDFAMQNVILQMGLRLLAPGGMQIRELHRWVLK
CHACYKVTTEIGRIFCPSCGNGGTLRKVAVTVGENGIVIAARRPRVSLRGTKFSLPLPQG
GRNAITKNPILREDQLPQKFLYPKTKKKNKEGDDIFTPDNLFVHHTDKKAPLQPPMRKAL
AVFSGRRNPNDNHYSRTMH
NT seq 1860 nt   +upstreamnt  +downstreamnt
atggaggtccagcccacatctcagcctccaccgcaatgttggagcaacatcgtgaagcag
caactgccgccaccgccgcaacagaaccaccaatcccctttcgccgccgcggcacctccg
cctcccaatcgggagttggtggggagttgcaattcgactaagggaatagcggtggcggta
gtggatgccaacgctatcatccagggtggtcagaatctgtcgcataacgccgaccgcttc
gtgtctgtcccggaggtcttgagcgaaatccgggatcctacctctcgccactccctccat
ttccttcctttcactgtggacaccatggaaccctcgcctgatgctctcaaaagagttatt
aactttgcaagggcaactggagatttgcagacactgtcagatgtagatctgaagctcatt
gctttgacttacatgttggagtctcaaattcatggaaccgagcaccttagggattgccca
ccaccaatccacacagtcaatgtgagaaggctgcctgaaaaggacatgcctgggtggggc
tccaatgttcccaatctggaagaatgggaagctcttgaacatgctgttgagggtggatca
aatactacctccagaattcttccccttaaagatttgagcatgaatgttgttccaacagat
caacagagtatagatggttcaactgtaaatgatagtaagtctcaatctgaggaccaagag
gatgctgattgtggtttcagggggcctagaaaatacatgtctcaaaaaaaggaggtaaag
attgaaggtaagaagatggtggcagatggggttgatgcttcacagggacaatatgatgat
gatgctggtgattggctgcctgctgtgagtcgaagcactcatagaaaatatctcagaaga
aagggtagacgagaactgcatgggacaccatctgaaagcaagcatgttggtggcaccgaa
gacctagatatcctacaggataaagcctccactgatattacagatgggaattcagcagag
agtggtattattaaagagaatggcaatgaagatatttctaaaattttaagtgaaatgaga
ctggaggaagaatcttcagtagctttacaggctagtgagaactgtgcttctgaaacgtta
gagtctaatgatttcaagagttcagatactgctgataacattaatggggatgtagaaaat
gtagaggatgatgtcgataaccttaatgaaatggcaagtcagacctgtgaaagcattgaa
acatcacaaatggatgatagtagcagtgaacagagttggatgctgagatccttgtctgag
tcaacagttgcttgtataactagtgattttgcaatgcaaaatgtgattcttcagatggga
ttgaggcttctggcacctggtgggatgcagattcgtgagttacacaggtgggtactaaag
tgccatgcctgctacaaggtgaccacagaaattggtaggatattctgcccaagttgtggg
aatggtggcactttacggaaagtggctgttacagtgggagaaaatggtattgttatcgca
gcaagaagaccacgtgtgtccttgcgtggaacaaaattttcactacctttgccccaagga
ggcaggaatgccattaccaagaaccccattttacgtgaggatcagcttccacagaagttc
ttgtaccctaaaacaaagaagaagaataaagagggagatgacatctttactccagacaac
ttatttgtccaccatactgataaaaaagctcccctgcagcctcccatgaggaaagcactg
gctgttttcagtggaaggagaaatcccaatgacaatcattattctcgtactatgcattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system