KEGG   Ipomoea nil (Japanese morning glory): 29082155
Entry
29082155          CDS       T04663                                 
Symbol
rpoB, IPN_cp074
Name
(RefSeq) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    29082155 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ini03021]
    29082155 (rpoB)
   03400 DNA repair and recombination proteins [BR:ini03400]
    29082155 (rpoB)
Enzymes [BR:ini01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     29082155 (rpoB)
Transcription machinery [BR:ini03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     29082155 (rpoB)
DNA repair and recombination proteins [BR:ini03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      29082155 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-GeneID: 29082155
NCBI-ProteinID: YP_009295096
UniProt: U3RAG5
Position
CP
AA seq 1062 aa
MTTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDIDQEIEFQLFVETYQLVEPLIKERD
AVYDSLTYSSELYVSARLIWKTSRDMQEQTIFIGSIPLMNSQGTSIVNGIYRIVINQILQ
SPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISILVLSSAMG
SNLREILENVCYPEIFLSFLSDKEKKKIGSKENAILEFYQQFACVDGDPIFSESLWKELQ
KKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDLLAAADHLIGLKFGMGTLDDMNH
LQNKRIRSVADLLQDQFGLALVRLENAVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESF
FGLHPLSQVLDRTNPLTQIVHGRKFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSE
GINVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLYLSPGRDEYYMVAAGNSLALN
QDIQEDQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNM
QRQAVPLSRSEKCIVGTGVERQAALDSGALVIAEREGRVVYTDTDKILFSGDGETLSIPL
VMYKRSNKNTCMHQKPQVQRGKCIKKGQILADGAATVEGELALGKNVLVAYMPWEGYNSE
DAVLISERLVYEDIYTSFHIKKYEIQTHVTSQGPEKVTNEIPHLEAHFIRNLDKNGIVKQ
GSWVETGDVLVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKVPIGGRGRVIDV
RWIQKKGGSSYNPEMIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSV
DLVFNPLGVPSRMNLGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKVVFSELYEAS
KQTANPWAFEPEYPGKSRIFDGRTGNPFEQPVLIGKPYILKLIHQVDDKIHGRSSGHYAL
VTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIVGGT
IPNPKDAPESFRLLVRELRSLALELNHFLVSEKNFQIHRKEA
NT seq 3189 nt   +upstreamnt  +downstreamnt
atgactacaatacccggatttaatcagatacaatttgaaggattttgtaggttcattgat
caaggtttgacggaagaactttctaagtttccaaaaattgaagatatagatcaagaaatt
gaatttcaattatttgtggaaacatatcaattggtagaacccttgataaaggaaagagat
gctgtgtatgactcactcacatattcttctgaattatatgtatcagcgagattaatttgg
aaaacaagtagggatatgcaagaacaaacaatttttattggaagcattcctctaatgaat
tcccagggaacttctatagtaaatggaatatatagaattgtgatcaatcaaatattgcaa
agccccggcatttattaccggtcagaattggaccataatggaatttcggtctataccggc
acaataatatcagattgggggggaagatcagaattagaaattgataggaaagcaaggata
tgggctcgtgtgagtaggaaacaaaaaatatctattctagttctatcatcagctatgggg
tcgaatctaagagaaattctagagaatgtctgctatcctgaaatttttttatcttttctg
agtgataaggagaaaaaaaaaattgggtcaaaagaaaacgccattttggaattttatcaa
caatttgcttgcgtagacggggatccaatattttctgaatccttatggaaggaattacaa
aagaaattttttcaacaaagatgtgaattgggaaggattggtcgacgaaatatgaaccga
agactgaaccttgatataccccagaacaatacatttttgttaccgcgagatttattggca
gccgccgatcatttgattggactgaaatttggaatgggtacacttgacgatatgaatcat
ttgcaaaataaacgtattcgttctgtagcggatcttttacaagatcaattcggattggct
ctagttcgtttagaaaatgcggttcgagggactatatgtggagcaattcggcataaattg
atacccactcctcagaatttggtaacttcaactcccttaacaactacttatgaatccttt
ttcgggttacacccattatctcaagttttggatcgaactaatccattgacacaaatagtt
catggcagaaaatttagttctttgggccctggggggctgacagggcgcactgctagtttt
cggatacgagatatccaccctagccactatgggcgtatttgcccaattgacacatctgaa
ggaatcaatgttggacttattggatccttagcaattcatgcgaggattgggcattgggga
tctctagaaagcccgttttatgaaatttccgagaggtcaacaggggtacggatgctttat
ttatcaccaggtagggatgaatactatatggtagcggcaggaaattctttggccttgaat
caggatattcaagaagaccaggttgttccagctcgataccgtcaagaattcctgactatt
gcatgggaacaagttcatcttcgaagtatttttcctttccaatatttttctatcggagct
tccctcattccttttatcgaacataatgatgcgaatcgagcgttaatgagttctaatatg
caacgtcaagcagttcccctttctcggtccgagaaatgcattgttgggacgggggtggaa
cgacaagcagctctagattcaggggctcttgttatagccgaacgtgagggaagggtcgtt
tataccgatactgacaagatccttttctctggtgatggagagactctaagcattccatta
gttatgtataaacgttccaacaaaaatacttgtatgcatcaaaaaccccaggttcagcgg
ggtaaatgtattaaaaagggacaaattttagcggatggtgctgctaccgttgagggcgaa
cttgctctggggaaaaacgtattggtagcttatatgccgtgggagggttacaattctgag
gatgcagtgctcattagtgaacgtttggtatatgaagatatttatacttcttttcacata
aagaaatatgaaattcaaactcatgtgacaagccaaggccctgaaaaagtcactaatgaa
ataccacatttagaagcccatttcattcgcaatttagacaaaaatggaattgtgaagcag
ggatcttgggtagagacgggtgatgttttagtaggtaaattaacaccccaggtggtgaaa
gaatcgtcgtatgcaccggaagatagattgttacgagccatacttggcattcaggtatct
acttcaaaagaaacttgtctaaaagttcctataggtggtagaggtcgggttattgatgtg
aggtggatccagaagaaggggggttccagttataatcccgaaatgattcgtgtctatatt
ttacagaaacgtgaaatcaaagtgggagataaagtagctggaagacatggaaataaaggt
atcatttcaaaaattttacctagacaagatatgccctatttacaagatggaagatccgtt
gatctggtcttcaacccattaggagtaccttcacgaatgaatctaggacagatatttgaa
tgttcactcgggctagcagggagtctgctagatagacattatcgaatagcaccttttgat
gaaagatatgaacaagaagcttcgagaaaagtagtcttttctgaattatatgaagccagt
aaacaaacagcgaatccatgggcatttgaacctgaatatccaggaaaaagcagaatattt
gatggaaggacggggaatccttttgaacaacctgttctaatagggaagccttatatcttg
aaattaattcatcaagttgatgataaaatccatgggcgttccagtggacattatgcgctt
gttacacaacaaccccttagaggaagagccaaacagggggggcaacgggtaggagaaatg
gaggtttgggctctagaaggatttggggttgctcatattttacaagagatgctgacttat
aaatcagatcatattagagctcgccaggaagtacttggtactacgatcgttggaggaaca
atacctaatcccaaagatgctccagaatcttttcgattgctcgttcgagaactacgatct
ttagctctggaactgaatcatttccttgtatctgagaagaacttccagattcataggaag
gaagcttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (27)   

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