KEGG   Isosphaera pallida: Isop_1091
Entry
Isop_1091         CDS       T01407                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ipa  Isosphaera pallida
Brite
KEGG Orthology (KO) [BR:ipa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ipa03032]
    Isop_1091
   03400 DNA repair and recombination proteins [BR:ipa03400]
    Isop_1091
Enzymes [BR:ipa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     Isop_1091
DNA replication proteins [BR:ipa03032]
 Prokaryotic type
  DNA Topoisomerases
   Isop_1091
DNA repair and recombination proteins [BR:ipa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Isop_1091
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim Zn_ribbon_recom Auto_anti-p27 Toprim_4 Rpr2
Other DBs
NCBI-ProteinID: ADV61679
UniProt: E8R4T3
Position
1566748..1569642
AA seq 964 aa
MARFSAASPSRRTTRTSQERSPSRDASIALESHDPTDPIPRFDEVSTDASEPASAHNGAT
SAASPRTTRTKSVTKKPKAGLSSTATKRTSRKATSAKRSTDNGEPVEGTAGVGSRSGKRQ
ALVIVESPKKAIAIGKFLGSGYVVKASKGHVRDLPKNVLGIDVDHEYRPTYEIIPKKEDT
ISELKRDANRADVVYLATDPDREGEAIAWHLKEALELPDEKVRRVRFHEITEKAVREAFQ
HAGPIDHHKVDAQQARRLMDRLMGYPLSQLLWKKVARHLNLSAGRVQSVAVRLIVEREKE
IRAFVPEEYWEITATLSAQGKTDELDRFTAKLAEWKGSKFKVDHETQARAIRDALTAAEF
VVRSVEDVEKKDPPAPPFKTSTLQQQASIRFRFSSDRTMSIAQQLYQGIDLGDGNTVGLI
TYMRTDSLRVSDEAIKGVREVIASRYGDAYLPVKPNQYEAGKLAQEAHEAIRPTDLSLTP
ESIQNRLTHDQFKLYQLIYRRFVASQMTPAIFAVTNVTIEAGEGVFKTQGKMLKFDGYRK
VLPPAGKQEDALLPPLVPHQILDLHALEPSQHFTQPPPRYNEASLIKALEKENIGRPSTY
ATIIQKIQERNYVEQKDRRFYATNLGMVVTDLLVEHFPKMLDLKYTSHIEDELDRIMSAE
ARMVQVLDEFYHPFQDALKVAETRMPKVQIPSDKVCPTCGAPMVEKYNKAGKFLGCSRYP
DCTTIMSADGTLKKAAVETEYQCLKCGKPLVMREGKRGEFLSCSGYPECKETYQLDEDGR
LIPTREETDYICSKCGKPMLKRQGPRGPFLGCSGYPKCKNTIQLDDQGQPVKTIEIDVKC
PKCGGPMAIKQSWRGPFLGCLNYPKCRGTAPIPPELKESHPELFVNTRAEDPIKAALKSL
TIDEPCSKCGKPMVARQGKKGFFLGCTGYPKCREVREPDEATLERIQQAVAAAEGLTAGS
PAAT
NT seq 2895 nt   +upstreamnt  +downstreamnt
gtggcacgtttttccgccgcgtccccatcccgacgtaccacccggacttcccaggaacga
tccccttcgagggacgcttcaattgccctggagtctcacgacccgactgatcctatccca
cggtttgatgaggtctcgactgacgcctccgagccggcgtctgctcacaatggggccacg
tcggcggcgtcgcctcgcacgacgcggaccaagagcgtgaccaaaaaacccaaggccggt
ttgagttccaccgcgactaagcggacctcgcgcaaagccacctccgccaagcgcagcacg
gacaatggtgaacccgtggagggaactgcgggcgtcgggtcccgttcaggcaaacgccag
gcgttggtgattgtggaaagtcccaaaaaggcgatcgccatcggcaagtttttggggagt
ggttacgtcgtcaaggccagcaagggtcacgtccgcgacctgcccaagaacgtcttgggg
attgacgtcgaccatgaataccgtcccacctacgaaatcatccccaagaaagaggacacg
atttccgaattgaaacgcgacgccaaccgcgcggacgtggtctacctggccaccgacccc
gaccgcgaaggcgaagcgattgcctggcacctcaaggaagcactcgaacttcccgacgag
aaggtgcggcgggtgcggttccacgaaatcaccgagaaggcagtacgcgaggcgttccag
cacgccggacccatcgaccaccacaaggtggacgcccaacaggcccgtcggctgatggac
cggctcatgggctaccccctcagtcagctgctgtggaagaaggtggcacgccacctcaac
ctgtcggccgggcgggttcagtcggtcgcggtgcggctcatcgtcgaacgcgagaaagag
atccgcgccttcgtgcccgaggaatactgggagatcaccgcgaccctctcggctcagggc
aagaccgacgagctggaccgcttcaccgccaagctcgccgagtggaagggttccaagttc
aaggtggatcatgagacccaggcccgtgccatccgcgatgcgctgaccgccgccgagttc
gtggtgcgttcggtggaggatgtcgagaaaaaggatccccccgctccccccttcaagacc
tcgaccctccagcaacaagcctcgatccgattccggttttcgtccgaccgcactatgtcg
attgcccaacagctttatcaaggcatcgacctaggcgacggcaataccgtgggactgatt
acctacatgcggaccgactcgctgcgtgtcagcgacgaggcgatcaaaggggtgcgtgaa
gtcattgcctcacgttacggcgacgcctacctgcccgtcaaacccaaccagtacgaagca
ggcaaactcgcccaagaggcccacgaggcgattcgacccaccgacctgagcctcaccccc
gagtcgatccagaaccggctgacccatgatcagttcaaactctatcaactgatttaccgc
cgcttcgtggccagccagatgaccccggcaatcttcgcggtcaccaatgtgacgatcgag
gcgggcgagggcgtcttcaagactcagggcaagatgctcaagttcgacggctaccgcaaa
gtccttccgcctgccggtaagcaggaggacgctttgctgccccccttggttccccaccag
atcctcgatctgcatgcgttggaaccatcccaacacttcacacagccccccccccgttac
aacgaggccagcctcatcaaggcgctggagaaggaaaacatcggccgcccctccacttac
gccacgattatccagaagatccaggagcgcaactacgtcgagcaaaaggatcgccgcttt
tatgccaccaaccttggcatggtcgtcaccgatttgttggtcgagcattttcccaagatg
ctcgacctcaaatacacctcgcacatcgaagacgaactcgaccggattatgagtgcggaa
gcgcgaatggtgcaggtgctggacgagttttatcacccgtttcaggacgccttgaaagtc
gctgagacgcggatgcccaaggtccagattccctcggacaaggtatgtccgacctgtggc
gctcccatggtcgaaaagtacaacaaggcgggtaaatttttgggttgctcgcgttatcct
gactgcaccaccataatgtcggccgacggcaccctcaaaaaagcggcggtcgagacggaa
taccaatgcctcaaatgcggcaaaccgctggtgatgcgcgagggtaagcgaggcgaattc
ctgtcctgctcggggtatcccgaatgcaaggaaacctatcaacttgacgaagacggccgc
ctgattcccactcgcgaggagaccgactacatttgctccaagtgcggtaaaccgatgctc
aagcgtcaggggccgcgcggaccgttcctaggttgttcaggctaccccaagtgcaagaac
acgattcaactcgacgatcaaggccagccggtcaagaccatcgagatcgacgtgaaatgt
cccaagtgtggcggacccatggcgatcaagcaaagctggcgcgggccatttttagggtgc
ctgaattatcctaagtgccgcggcaccgcgccgattccgccggaactcaaagagagtcat
cccgagctgtttgtcaacacccgcgccgaagaccccatcaaggccgcgttgaagtcgttg
accattgacgaaccatgcagcaaatgcggcaaaccgatggtggcacgtcaggggaaaaaa
ggctttttcctgggttgtaccggctatcccaaatgccgtgaggtgagagagccggacgaa
gccaccctggaacgcatccagcaagcggtcgccgccgccgaagggctgacagctggctct
cccgcagccacttga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (40)   

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