KEGG   Idiomarina piscisalsi: CEW91_01275
Entry
CEW91_01275       CDS       T04931                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ipi  Idiomarina piscisalsi
Pathway
ipi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ipi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CEW91_01275 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ipi03021]
    CEW91_01275 (rho)
   03019 Messenger RNA biogenesis [BR:ipi03019]
    CEW91_01275 (rho)
Transcription machinery [BR:ipi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CEW91_01275 (rho)
Messenger RNA biogenesis [BR:ipi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CEW91_01275 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 NACHT OB_RNB AAA_22 AAA
Other DBs
NCBI-ProteinID: ASG64872
UniProt: A0A241R130
Position
271770..273038
AA seq 422 aa
MNLTELKDKPVNELVELADSMGLENMARLRKQDIIFAILKAHAKSGEDIYGGGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHADERFRLERGNGSTEDITARVLDLSAPIGKGQRGLIVAPP
KAGKTLLLQNVATSIAANHPEAELIVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKLAEKRVFPAIDF
NRSGTRREELLTSQDELQKMWILRKIMNPMGEVEAMEFLIDRLQMTKTNDEFFESMKRQR
NS
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaatctaactgaacttaaagataaacccgtaaacgagcttgttgagctcgcggactca
atgggccttgagaatatggcccgtctgcgtaagcaggacatcatttttgctattttaaaa
gcccacgcgaaaagcggtgaagacatatacggcggcggtgtgttggaaatattgcaggac
ggcttcggcttcttgcgatcggccgattcgtcatatttggccggtccggatgacatttat
gtatcgcctagccaaattcgtcgctttaacttgcgcacaggtgatacgattggcggtaaa
attcgaccgccgaaagacagcgaacgttattttgccctcctgaaaattcgcgaagtcaac
tttgacaaacctgaaaactcccgtaataaaattctctttgaaaacctgacaccattgcac
gcagatgaacgttttcgtttagagcgcggtaatggcagtacggaagatattacggcgcgc
gttctcgacttgtcggccccgattggtaaaggccagcgtggtcttattgtggcgccaccg
aaagcgggtaagacgctattactgcaaaacgttgcaacgtctattgcggcgaatcatccg
gaagcagagcttattgtactgcttatcgatgagcgtccggaagaagtaacggaaatgcac
cgtttggtacagggtgaagtggttgcttcaaccttcgatgagccagccagtcgccacgta
caggtcgcggaaatggttatcgagaaagcgaagcgtttggttgagcacaaaaaagatgtt
gtcatcttattggattcaattactcgtttggcgcgcgcttataacaccgttattccaagc
tcaggtaaagtcctgacaggtggtgtggacgctaacgcgctgcataaaccaaaacgtttc
tttggtgccgcacgtaacgttgaagaaggcggcagcttaaccattattgcgacagcgctt
atcgacaccggctcaaagatggatgaagttatctacgaagagtttaaaggtaccggtaac
atggaattgcacttgaaccgtaagttggcagagaagcgagttttccctgcaatcgacttt
aaccgttcaggtacacgtcgtgaagaattgctgacgtctcaggacgagcttcagaaaatg
tggatcctgcggaagattatgaacccaatgggcgaagttgaagccatggagtttttgatt
gaccgtttgcaaatgactaagaccaacgacgaattcttcgaatcgatgaagcgtcaacgc
aacagctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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